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questions
8
votes
7
replies
3.8k
views
Question about bowtie
bowtie
updated 16 months ago by
GenoMax
142k • written 9.7 years ago by
biolab
★ 1.4k
23
votes
16
replies
36k
views
11 follow
Any tools converting Genbank format to GFF3 format?
genbank
gff
updated 20 months ago by
Matteo Schiavinato
★ 3.6k • written 9.1 years ago by
biolab
★ 1.4k
4
votes
8
replies
8.1k
views
Blast Against Sra Dataset
blast
updated 22 months ago by
Ram
43k • written 10.5 years ago by
biolab
★ 1.4k
2
votes
4
replies
3.2k
views
problem with bedtools complement: how to extract strand information?
bedtools
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
3
votes
4
replies
4.9k
views
Plant orthologous gene database
Orthologous-database
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
biolab
★ 1.4k
60
votes
15
replies
77k
views
9 follow
BAM/SAM to FASTA conversion
sam
bam
updated 2.1 years ago by
Ram
43k • written 9.2 years ago by
biolab
★ 1.4k
1
vote
2
replies
2.0k
views
How to highlight regions in RNA second structure
RNA second structure
updated 4.4 years ago by
shzhang
▴ 10 • written 6.2 years ago by
biolab
★ 1.4k
166
votes
52
replies
128k
views
28 follow
Fastq Convert To Fasta
perl
10.5 years ago by
biolab
★ 1.4k
1
vote
5
replies
2.5k
views
Interesting Question about RNAhybrid
RNAfold
RNAhybrid
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
biolab
★ 1.4k
12
votes
7
replies
8.8k
views
6 follow
How To Combine Several Perl Scripts Into One?
perl
updated 4.6 years ago by
MirceaMirea
• 0 • written 10.3 years ago by
biolab
★ 1.4k
7
votes
11
replies
9.0k
views
8 follow
fastx toolkit problem: fastq to fasta
fastx
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
0
votes
2
replies
3.5k
views
How to convert genomic position to transcript position?
gff
updated 5.5 years ago by
Biostar
20 • written 8.1 years ago by
biolab
★ 1.4k
6
votes
5
replies
14k
views
NCBI protein IDs convert to gene IDs and then gene sequences
ncbi
id
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
biolab
★ 1.4k
2
votes
6
replies
4.4k
views
tophat failed: Warning: junction database is empty!
tophat
mapping
updated 24 months ago by
Ram
43k • written 9.2 years ago by
biolab
★ 1.4k
36
votes
13
replies
24k
views
8 follow
Get intronic and intergenic sequences based on gff file
GFF
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
biolab
★ 1.4k
5
votes
11
replies
6.9k
views
Usage of Perl Needleman/Wunsch Module
alignment
global
needleman-wunsh
PERL
module
updated 2.3 years ago by
Ram
43k • written 9.9 years ago by
biolab
★ 1.4k
2
votes
3
replies
8.4k
views
bowtie problem: cannot locate bowtie index
bowtie
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
3
votes
5
replies
2.7k
views
How to decrease computing time of reciprocal BLAST
blast
Reciprocal-Best-Hits
orthologous
updated 18 months ago by
Ram
43k • written 8.8 years ago by
biolab
★ 1.4k
0
votes
0
replies
1.8k
views
bowtie XA tag
bowtie
6.8 years ago by
biolab
★ 1.4k
2
votes
9
replies
4.1k
views
How to download raw data in batch from NCBI based on Series Accession number or Platform ID
sra
updated 6.8 years ago by
Istvan Albert
100k • written 7.0 years ago by
biolab
★ 1.4k
4
votes
5
replies
3.5k
views
HISAT2: does the parameter -k 1 means unique mapping?
hisat2
updated 6.8 years ago by
WouterDeCoster
47k • written 6.8 years ago by
biolab
★ 1.4k
2
votes
2
replies
3.7k
views
Is it necessary to include --known-splicesite-infile in HISAT2?
hisat2
updated 6.8 years ago by
GenoMax
142k • written 6.8 years ago by
biolab
★ 1.4k
4
votes
7
replies
2.3k
views
Is it OK to use --split-files option in fastq-dump when processing SE data?
fastq-dump
updated 6.9 years ago by
Devon Ryan
104k • written 6.9 years ago by
biolab
★ 1.4k
3
votes
8
replies
1.8k
views
Removing shorter reads in PE mapping
mapping
updated 7.0 years ago by
h.mon
35k • written 7.0 years ago by
biolab
★ 1.4k
0
votes
5
replies
1.1k
views
Which tool was used to generate this mapping file?
mapping
7.0 years ago by
biolab
★ 1.4k
4
votes
7
replies
2.4k
views
How to embed genome browser in a web site?
genome browser
updated 7.1 years ago by
cmdcolin
★ 3.8k • written 7.1 years ago by
biolab
★ 1.4k
2
votes
2
replies
2.9k
views
Output unmapped reads to a file when using tophat2
tophat2
updated 2.1 years ago by
Ram
43k • written 9.2 years ago by
biolab
★ 1.4k
6
votes
3
replies
3.9k
views
Tophat --max-multihits option
tophat
updated 22 months ago by
Ram
43k • written 9.1 years ago by
biolab
★ 1.4k
4
votes
7
replies
8.8k
views
Which model to choose in edgeR analysis?
edgeR
updated 7.8 years ago by
Benn
8.3k • written 7.8 years ago by
biolab
★ 1.4k
19
votes
15
replies
27k
views
6 follow
tophat-cufflinks command pipeline
cufflinks
tophat
updated 15 months ago by
Ram
43k • written 9.4 years ago by
biolab
★ 1.4k
8
votes
3
replies
5.3k
views
Arabidopsis GFF files
Arabidopsis
gff
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
biolab
★ 1.4k
4
votes
3
replies
1.8k
views
How to identify the loci producing differential small RNAs between two samples?
small RNAs
7.9 years ago by
biolab
★ 1.4k
1
vote
2
replies
2.4k
views
FASTQ file error
fastq
8.0 years ago by
biolab
★ 1.4k
1
vote
2
replies
1.7k
views
bowtie1 parameter -k
bowtie1
updated 8.1 years ago by
mastal511
★ 2.1k • written 8.1 years ago by
biolab
★ 1.4k
2
votes
4
replies
4.6k
views
tophat install problem
tophat
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
biolab
★ 1.4k
1
vote
2
replies
2.1k
views
Method to identify novel transcript based on strand-specific RNAseq
cufflinks
updated 21 months ago by
Ram
43k • written 8.3 years ago by
biolab
★ 1.4k
7
votes
5
replies
3.8k
views
question about unstranded RNA-seq
unstranded
RNA-seq
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
biolab
★ 1.4k
5
votes
9
replies
4.4k
views
IGV view of bam file
igv
updated 21 months ago by
Ram
43k • written 8.4 years ago by
biolab
★ 1.4k
2
votes
3
replies
3.4k
views
Is HTseq result based on uniquely mapped reads?
htseq
updated 21 months ago by
Ram
43k • written 8.4 years ago by
biolab
★ 1.4k
7
votes
4
replies
5.9k
views
How to get fasta sequences based on bt2 index?
index
bowtie2
updated 21 months ago by
Ram
43k • written 8.5 years ago by
biolab
★ 1.4k
1
vote
2
replies
2.3k
views
tophat-cuffdiff or tophat-cufflinks-cuffmerge-cuffdiff?
cuffdiff
cufflinks
updated 22 months ago by
Ram
43k • written 8.5 years ago by
biolab
★ 1.4k
4
votes
6
replies
7.6k
views
What tools to perform alignment without adding gaps in?
alignment
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
biolab
★ 1.4k
0
votes
0
replies
1.3k
views
Problem with using BamView
BamView
updated 20 months ago by
Ram
43k • written 8.5 years ago by
biolab
★ 1.4k
7
votes
2
replies
6.7k
views
Where to find BLAST+ default parameters?
blast
updated 20 months ago by
Ram
43k • written 8.5 years ago by
biolab
★ 1.4k
20
votes
17
replies
8.5k
views
8 follow
Merge Files (Adding File Names To Sequence Names)
perl
awk
updated 8.5 years ago by
Biostar
20 • written 10.4 years ago by
biolab
★ 1.4k
7
votes
9
replies
4.8k
views
Why some lines of BAM file do not contain NH tag
bam
NH-tag
updated 20 months ago by
Ram
43k • written 8.5 years ago by
biolab
★ 1.4k
2
votes
7
replies
4.0k
views
Bowtie Assembly Parameters
assembly
updated 8.5 years ago by
Biostar
20 • written 10.5 years ago by
biolab
★ 1.4k
4
votes
3
replies
2.7k
views
Where to batch download Arabidopsis gene expression data?
arabidopsis
expression
updated 19 months ago by
Ram
43k • written 8.6 years ago by
biolab
★ 1.4k
0
votes
0
replies
3.0k
views
Cuffmerge: invalid BAM binary header
cuffmerge
cufflinks
updated 19 months ago by
Ram
43k • written 8.7 years ago by
biolab
★ 1.4k
2
votes
8
replies
2.4k
views
orthologous proteins clustering
Reciprocal-Best-Hits
blast
updated 19 months ago by
Ram
43k • written 8.7 years ago by
biolab
★ 1.4k
135 results • Page
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