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3
votes
2
replies
2.0k
views
affy Transcriptome Analysis Console (TAC), export expression matrix?
affy TAC expression matrix
4.0 years ago by RNAseqer ▴ 270
1
vote
2
replies
727
views
Small number of genes, drop in sft fit curve at higher threshold powers. why?
sft wgcna scale-free
updated 4.1 years ago by 88k • written 4.1 years ago by ▴ 270
0
votes
0
replies
1.1k
views
Comment: C: Excel: using quartiles & averageifs to combine probe values without outliers
4.2 years ago by RNAseqer ▴ 270
2
votes
1
reply
1.1k
views
Answer: C: Excel: using quartiles & averageifs to combine probe values without outliers
4.2 years ago by RNAseqer ▴ 270
3
votes
3
replies
1.1k
views
Excel: using quartiles & averageifs to combine probe values without outliers
excel outliers quartile averageifs matching
updated 4.2 years ago by 14k • written 4.2 years ago by ▴ 270
1
vote
0
replies
1.6k
views
Comment: C: A good place to get immune cell deconvolution reference datasets?
4.3 years ago by RNAseqer ▴ 270
0
votes
0
replies
1.6k
views
Comment: C: A good place to get immune cell deconvolution reference datasets?
4.3 years ago by RNAseqer ▴ 270
4
votes
4
replies
1.6k
views
A good place to get immune cell deconvolution reference datasets?
deconvolution reference datasets
updated 4.3 years ago by ★ 16k • written 4.3 years ago by ▴ 270
3
votes
3
replies
1.6k
views
Correlating WGCNA modules to Diseased/Not-Diseased Trait
WGCNA Modules Traits
updated 4.7 years ago by 3.6k • written 4.7 years ago by ▴ 270
0
votes
1
reply
991
views
extracting a subset of probes from an expression object
subset probes microarray exprs
updated 4.8 years ago by 20 • written 5.0 years ago by ▴ 270
1
vote
1
reply
5.2k
views
how to adjust for continuous covariates in limma?
limma continuous covariates DE
updated 4.9 years ago by 19k • written 4.9 years ago by ▴ 270
0
votes
0
replies
575
views
summarized probes with expresso. how do i get transcript IDs?
affy expresso transcript ID
4.9 years ago by RNAseqer ▴ 270
0
votes
0
replies
882
views
is there an function to summarize miRNA array probes but do nothing else?
summarise probes affy miRNA
4.9 years ago by RNAseqer ▴ 270
0
votes
0
replies
2.3k
views
Comment: C: changing feature names (row names) for expressionset object?
5.0 years ago by RNAseqer ▴ 270
0
votes
0
replies
2.3k
views
Comment: C: changing feature names (row names) for expressionset object?
5.0 years ago by RNAseqer ▴ 270
2
votes
5
replies
2.3k
views
changing feature names (row names) for expressionset object?
expressionset limma rownames
5.0 years ago by RNAseqer ▴ 270
0
votes
0
replies
890
views
whats is the best normalization technique for miRNA microarray data?
normalization miRNA microarray
5.0 years ago by RNAseqer ▴ 270
0
votes
0
replies
5.8k
views
Comment: C: How to in R: Include principal components as covariates in analysis
5.0 years ago by RNAseqer ▴ 270
0
votes
1
reply
3.0k
views
Comment: C: pData function not found. substitute? "An end to end workflow for differential g
5.0 years ago by RNAseqer ▴ 270
6
votes
4
replies
3.0k
views
pData function not found. substitute? "An end to end workflow for differential gene expression using Affymetrix microarrays"
pvca bioconductor sva pData R
updated 5.0 years ago by 11k • written 5.0 years ago by ▴ 270
0
votes
0
replies
1.6k
views
making limma design matrix with covariates, a strange labelling issue?
limma design matrix labels columns
5.0 years ago by RNAseqer ▴ 270
0
votes
1
reply
5.8k
views
Comment: C: How to in R: Include principal components as covariates in analysis
5.0 years ago by RNAseqer ▴ 270
1
vote
5
replies
5.8k
views
How to in R: Include principal components as covariates in analysis
pca covariates principal components
updated 5.0 years ago by 88k • written 5.0 years ago by ▴ 270
3
votes
1
reply
688
views
batchCombat package for R?
batchCombat R
updated 5.0 years ago by 82k • written 5.0 years ago by ▴ 270
3
votes
3
replies
2.5k
views
Principal component analysis of SVA's surrogate variables
sva stdev surrogate variables
updated 5.0 years ago by 12k • written 5.0 years ago by ▴ 270
0
votes
0
replies
2.5k
views
Comment: C: Principal component analysis of SVA's surrogate variables
5.0 years ago by RNAseqer ▴ 270
0
votes
1
reply
1.6k
views
contrast matrix design question, limma-sva
contrast matrix sva limma
5.0 years ago by RNAseqer ▴ 270
0
votes
0
replies
1.0k
views
sva pprob.b all 0s?
sva microarray r pprob.b
5.0 years ago by RNAseqer ▴ 270
1
vote
0
replies
13k
views
Comment: C: Setting a threshold for FDR correction
5.0 years ago by RNAseqer ▴ 270
0
votes
1
reply
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
updated 5.0 years ago by 35k • written 5.0 years ago by ▴ 270
1
vote
0
replies
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
0
votes
0
replies
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
0
votes
0
replies
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
0
votes
1
reply
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
0
votes
1
reply
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
0
votes
1
reply
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
0
votes
2
replies
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
0
votes
0
replies
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
0
votes
2
replies
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
0
votes
1
reply
4.3k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.0 years ago by RNAseqer ▴ 270
11
votes
22
replies
4.3k
views
No significant DEG: A request to double check my commands for limma.
limma differential-gene-expression
updated 5 weeks ago by 43k • written 5.0 years ago by ▴ 270
1
vote
0
replies
7.5k
views
Comment: C: how do you remove the trace in heatmap.2 in R?
5.0 years ago by RNAseqer ▴ 270
7
votes
3
replies
7.5k
views
how do you remove the trace in heatmap.2 in R?
heatmap.2 r microarray heat map
updated 5.1 years ago by 88k • written 5.1 years ago by ▴ 270
1
vote
0
replies
1.3k
views
Comment: C: limma, best practices review paper?
5.1 years ago by RNAseqer ▴ 270
2
votes
2
replies
1.3k
views
limma, best practices review paper?
R limma microarray
updated 5.1 years ago by 88k • written 5.1 years ago by ▴ 270
1
vote
0
replies
8.7k
views
Comment: C: pulling snps from vcf file using ids
5.1 years ago by RNAseqer ▴ 270
0
votes
0
replies
2.4k
views
Comment: C: No Sensitivity/Accuracy output from gffcompare, what am I doing wrong?
5.1 years ago by RNAseqer ▴ 270
0
votes
0
replies
929
views
Comment: C: minimum snp number from set in LD
5.1 years ago by RNAseqer ▴ 270
0
votes
2
replies
929
views
minimum snp number from set in LD
snps ld minimum snp number
updated 5.1 years ago by ★ 1.4k • written 5.1 years ago by ▴ 270
15
votes
2
replies
8.7k
views
pulling snps from vcf file using ids
vcf ids snps
updated 5.1 years ago by 88k • written 5.1 years ago by ▴ 270
128 results • Page 2 of 3
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