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1.1k
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Comment:
Comment: Custom genome installation in SigProfileMatrixGenerator
12 months ago by
Ian
6.0k
0
votes
0
replies
1.1k
views
Comment:
Comment: ChIP-seq problem
16 months ago by
Ian
6.0k
0
votes
1
reply
1.1k
views
Comment:
Comment: ChIP-seq problem
16 months ago by
Ian
6.0k
0
votes
0
replies
2.9k
views
Comment:
Comment: Are there mm39/GRCm39 blacklist regions?
23 months ago by
Ian
6.0k
0
votes
0
replies
2.9k
views
Comment:
Comment: Are there mm39/GRCm39 blacklist regions?
23 months ago by
Ian
6.0k
0
votes
1
reply
1.3k
views
Comment:
Comment: How to count mapping rates for ChIP-seq?
23 months ago by
Ian
6.0k
0
votes
0
replies
1.2k
views
Comment:
Comment: Tool/method to calculate the sequence context of variants?
3.0 years ago by
Ian
6.0k
0
votes
1
reply
2.2k
views
Comment:
C: Comparing input read subtracted ChIP-read profiles using Deeptools2
3.6 years ago by
Ian
6.0k
1
vote
0
replies
59k
views
Comment:
C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 3.9 years ago by
Ram
43k • written 13.0 years ago by
Ian
6.0k
0
votes
1
reply
24k
views
Comment:
C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Ian
6.0k
0
votes
0
replies
24k
views
Comment:
C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
updated 4.4 years ago by
Ram
43k • written 10.0 years ago by
Ian
6.0k
0
votes
2
replies
16k
views
Comment:
C: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.5 years ago by
Ram
43k • written 8.5 years ago by
Ian
6.0k
0
votes
1
reply
16k
views
Comment:
C: Bowtie 2 - is there a way to discard reads mapping to multiple locations?
updated 4.5 years ago by
Ram
43k • written 8.5 years ago by
Ian
6.0k
0
votes
0
replies
12k
views
Comment:
C: How To Efficiently Remove Snps That Are Present In All Samples?
updated 4.6 years ago by
Ram
43k • written 13.1 years ago by
Ian
6.0k
0
votes
0
replies
12k
views
Comment:
C: How To Efficiently Remove Snps That Are Present In All Samples?
updated 4.6 years ago by
Ram
43k • written 13.1 years ago by
Ian
6.0k
0
votes
0
replies
1.6k
views
Comment:
C: Help need to use information in an multiple fasta alignment (MFA) file?
4.7 years ago by
Ian
6.0k
0
votes
1
reply
1.6k
views
Comment:
C: Help need to use information in an multiple fasta alignment (MFA) file?
4.7 years ago by
Ian
6.0k
0
votes
0
replies
8.1k
views
Comment:
C: ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
5.2 years ago by
Ian
6.0k
0
votes
0
replies
3.2k
views
Comment:
C: Biological significance of Fold_enrichment in macs2
6.3 years ago by
Ian
6.0k
1
vote
0
replies
4.0k
views
Comment:
C: How can I locate motif in DNA sequence.
6.5 years ago by
Ian
6.0k
1
vote
0
replies
8.5k
views
Comment:
C: BagFoot TF foot printing
6.5 years ago by
Ian
6.0k
1
vote
1
reply
8.0k
views
Comment:
C: How to choose Trimmomatic's parameter 'MINLEN '?
6.9 years ago by
Ian
6.0k
1
vote
0
replies
4.2k
views
Comment:
C: Peak calling for broad histone-modification regions
7.0 years ago by
Ian
6.0k
0
votes
1
reply
3.7k
views
Comment:
C: prepare pair-ended reads for peak calling
7.0 years ago by
Ian
6.0k
0
votes
1
reply
3.7k
views
Comment:
C: prepare pair-ended reads for peak calling
7.1 years ago by
Ian
6.0k
0
votes
1
reply
29k
views
Comment:
C: Extract Sequence From Fasta File Using Ids From A Separate File
7.1 years ago by
Ian
6.0k
0
votes
1
reply
2.6k
views
Comment:
C: How to extend variable length intervals to the same final length?
7.2 years ago by
Ian
6.0k
0
votes
0
replies
2.6k
views
Comment:
C: How to extend variable length intervals to the same final length?
7.2 years ago by
Ian
6.0k
0
votes
1
reply
1.9k
views
Comment:
C: ChIP on chip array cover genome or promoter regions?
7.2 years ago by
Ian
6.0k
15
votes
1
reply
240k
views
Comment:
C: Tools To Calculate Average Coverage For A Bam File?
7.3 years ago by
Ian
6.0k
0
votes
2
replies
4.2k
views
Comment:
C: call differential peaks H3K27ac
7.5 years ago by
Ian
6.0k
1
vote
0
replies
4.8k
views
Comment:
C: Trim adapter sequence for single-end
7.6 years ago by
Ian
6.0k
0
votes
1
reply
2.8k
views
Comment:
C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
8.0 years ago by
Ian
6.0k
0
votes
0
replies
2.8k
views
Comment:
C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
8.0 years ago by
Ian
6.0k
1
vote
0
replies
6.5k
views
Comment:
C: Chip-Seq Peak hight difference between BED and BW file formats.
8.1 years ago by
Ian
6.0k
0
votes
0
replies
5.6k
views
Comment:
C: Do I need to remove adapter if FastQC showed no adapter content.
8.1 years ago by
Ian
6.0k
0
votes
0
replies
3.7k
views
Comment:
C: 'effective genome size' , how precisse does it have to be?
8.2 years ago by
Ian
6.0k
1
vote
1
reply
6.5k
views
Comment:
C: Chip-Seq Peak hight difference between BED and BW file formats.
8.3 years ago by
Ian
6.0k
0
votes
0
replies
7.6k
views
Comment:
C: Doubts related to MACS tool
8.3 years ago by
Ian
6.0k
1
vote
1
reply
7.3k
views
Comment:
C: Possible augmented reality tools for bioinformatics and current problems
8.4 years ago by
Ian
6.0k
0
votes
1
reply
3.7k
views
Comment:
Comment: How to remove kmer profiles?
updated 20 months ago by
Ram
43k • written 8.6 years ago by
Ian
6.0k
0
votes
1
reply
3.2k
views
Comment:
Comment: Best to overlap hundreds of BED files to one master BED file?
updated 18 months ago by
Ram
43k • written 8.7 years ago by
Ian
6.0k
0
votes
2
replies
3.2k
views
Comment:
Comment: Best to overlap hundreds of BED files to one master BED file?
updated 18 months ago by
Ram
43k • written 8.8 years ago by
Ian
6.0k
0
votes
0
replies
2.9k
views
Comment:
Comment: Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
updated 17 months ago by
Ram
43k • written 8.8 years ago by
Ian
6.0k
0
votes
1
reply
1.7k
views
Comment:
Comment: Peak calling on FastX-collapser processed data
updated 16 months ago by
Ram
43k • written 8.9 years ago by
Ian
6.0k
0
votes
0
replies
2.6k
views
Comment:
Comment: Galaxy and ProFTP
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Ian
6.0k
0
votes
0
replies
4.5k
views
Comment:
Comment: htseq-count problem with --samout option
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Ian
6.0k
0
votes
2
replies
4.5k
views
Comment:
Comment: htseq-count problem with --samout option
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Ian
6.0k
0
votes
1
reply
10k
views
Comment:
C: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
9.2 years ago by
Ian
6.0k
0
votes
0
replies
9.7k
views
Comment:
Comment: How do I view the height / distribution of ChIP-seq peaks?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Ian
6.0k
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