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questions
0
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replies
383
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Microbiome / metagenomics databases
microbiome
database
metagenomics
17 months ago by
erwan.scaon
▴ 940
0
votes
0
replies
419
views
Enterotypes - Get raw data from E. Le Chatelier et al., 2013
Enterotypes
MGnify
updated 13 months ago by
Ram
43k • written 23 months ago by
erwan.scaon
▴ 940
2
votes
4
replies
5.5k
views
blast culling_limit option behavior
blastn
alignment
culling_limit
updated 2.6 years ago by
joe.westley
▴ 20 • written 7.4 years ago by
erwan.scaon
▴ 940
0
votes
4
replies
871
views
Extract all seqs bewteen two seqs ID in Fastq
fastq
awk
sed
updated 3.8 years ago by
Pierre Lindenbaum
161k • written 3.8 years ago by
erwan.scaon
▴ 940
0
votes
4
replies
2.4k
views
Diffbind error : sequences from an unspecified genome; no seqlengths
Diffbind
MACS2
GRanges
MACS
ChIP-Seq
updated 4.8 years ago by
kieran.short
• 0 • written 6.1 years ago by
erwan.scaon
▴ 940
0
votes
0
replies
901
views
Find the closest Salmonella complete genome (starting with a NGS sample from a single Salmonella strain)
salmonella
strainseeker
snippy
5.5 years ago by
erwan.scaon
▴ 940
3
votes
20
replies
2.8k
views
edirect esearch : exclude given accessions
edirect
esearch
ncbi
5.6 years ago by
erwan.scaon
▴ 940
11
votes
28
replies
4.0k
views
ChIP-Seq samples : FASTQ quality control
ChIP-Seq
QC
6.1 years ago by
erwan.scaon
▴ 940
0
votes
1
reply
2.3k
views
Trying to map informations between two Mus musculus strains with biomaRt external_gene_name field
biomaRt
129S1/SvImJ
external_gene_name
ensembl
updated 6.4 years ago by
Mike Smith
★ 2.0k • written 6.4 years ago by
erwan.scaon
▴ 940
28
votes
1
reply
16k
views
Read pair orientation : Illumina TruSeq Stranded mRNA library
featureCounts
TruSeq
strandSpecific
updated 6.4 years ago by
igor
13k • written 6.4 years ago by
erwan.scaon
▴ 940
0
votes
6
replies
2.3k
views
Looking for a thorough annotation for non-primary assembly units in GRCm38
GRCm38
mus musculus
GTF
GFF
GENCODE
6.4 years ago by
erwan.scaon
▴ 940
12
votes
4
replies
4.5k
views
Retrieve genbank viral genomes
ncbi
genbank
viral-genome
updated 13 months ago by
Ram
43k • written 6.8 years ago by
erwan.scaon
▴ 940
18
votes
6
replies
10k
views
COSMIC vcf file compatibility for Mutect2
GATK
Mutect2
COSMIC
VCF
7.1 years ago by
erwan.scaon
▴ 940
5
votes
3
replies
6.0k
views
Quality control for Ion Torrent
sequencing
updated 7.5 years ago by
Medhat
9.7k • written 7.5 years ago by
erwan.scaon
▴ 940
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