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Comment: Comment: Flagstats and multiqc
2.9 years ago by prasundutta87 ▴ 660
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2.7k
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Comment: Comment: how to get iDs in VCF file?
2.9 years ago by prasundutta87 ▴ 660
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Answer: Answer: Given my background, what are my chances of being accepted into a PhD program at
2.9 years ago by prasundutta87 ▴ 660
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819
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Answer: Answer: How can a mapping be performed without alignment?
2.9 years ago by prasundutta87 ▴ 660
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1.0k
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Comment: Comment: Mutation hunting in 100 exome samples
2.9 years ago by prasundutta87 ▴ 660
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0
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2.7k
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Comment: Comment: Comparing two variant files
2.9 years ago by prasundutta87 ▴ 660
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2.7k
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Comment: Comment: Comparing two variant files
2.9 years ago by prasundutta87 ▴ 660
0
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1
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2.7k
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Comment: Comment: Comparing two variant files
2.9 years ago by prasundutta87 ▴ 660
1
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1
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2.1k
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Comment: Comment: How do I filter a multi-individual BCF file for genotype probabilities
3.0 years ago by prasundutta87 ▴ 660
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4.6k
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Comment: Comment: how to use the samtools filtering expression ?
3.0 years ago by prasundutta87 ▴ 660
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2
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4.6k
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Comment: Comment: how to use the samtools filtering expression ?
3.0 years ago by prasundutta87 ▴ 660
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0
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1.9k
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Comment: Comment: Allele Specific Expression (ASE) from RNA seq data
3.0 years ago by prasundutta87 ▴ 660
0
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1
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1.9k
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Comment: Comment: Allele Specific Expression (ASE) from RNA seq data
3.0 years ago by prasundutta87 ▴ 660
1
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0
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911
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Answer: Answer: PCA plot making
3.1 years ago by prasundutta87 ▴ 660
0
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0
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1.7k
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Comment: Comment: remove unmapped reads on a specific chromosome only
3.1 years ago by prasundutta87 ▴ 660
0
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1
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1.7k
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Answer: Answer: remove unmapped reads on a specific chromosome only
3.1 years ago by prasundutta87 ▴ 660
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0
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1.3k
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Comment: Comment: Finding transcriptome coverage of genome
3.1 years ago by prasundutta87 ▴ 660
0
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0
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906
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Comment: Comment: Multiple Transctipr ID (NM ) from MyVariantInfo
3.1 years ago by prasundutta87 ▴ 660
2
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1
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1.3k
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Comment: Comment: TiTv ratio
3.1 years ago by prasundutta87 ▴ 660
2
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0
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1.4k
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Comment: Comment: Picard and GaTK HaplotypeCaller
3.1 years ago by prasundutta87 ▴ 660
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0
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2.1k
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Answer: A: Read VEP output from command line in R
3.1 years ago by prasundutta87 ▴ 660
0
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0
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718
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Comment: C: How to keep the individual read depth with bcftools call?
3.1 years ago by prasundutta87 ▴ 660
0
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1
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7.5k
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Comment: C: how to remove duplicates with picard
3.2 years ago by prasundutta87 ▴ 660
0
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0
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11k
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Comment: C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.2 years ago by prasundutta87 ▴ 660
0
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0
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11k
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Comment: C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.2 years ago by prasundutta87 ▴ 660
0
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1
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11k
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Comment: C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.2 years ago by prasundutta87 ▴ 660
0
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0
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2.5k
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Comment: C: GATK tool to merge INDEL with SNPs with the same set of samples
3.2 years ago by prasundutta87 ▴ 660
0
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0
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1.5k
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Comment: C: bcftools norm resulting in '*' in alternate allele
3.2 years ago by prasundutta87 ▴ 660
2
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2
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1.5k
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bcftools norm resulting in '*' in alternate allele
SNP bcftools VCF exome
3.2 years ago by prasundutta87 ▴ 660
1
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1
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1.3k
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Using GRch38 (human genome) primary assembly for mapping long reads
assembly alignment
updated 3.2 years ago by 6.4k • written 3.2 years ago by ▴ 660
1
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0
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975
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Answer: A: Human Exome Variant Reference
3.2 years ago by prasundutta87 ▴ 660
0
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0
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444
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number of reads outside exonic regions in an exome sequencing experiment
exome next-gen sequencing
3.2 years ago by prasundutta87 ▴ 660
0
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1
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3.2k
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Comment: C: Determine the sex of a sample from a .vcf
3.2 years ago by prasundutta87 ▴ 660
2
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1
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3.2k
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Answer: A: Determine the sex of a sample from a .vcf
3.2 years ago by prasundutta87 ▴ 660
0
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0
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877
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Using 1000 genomes phase 3 variants for BQSR
SNP next-gen snp GATK
3.2 years ago by prasundutta87 ▴ 660
0
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0
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839
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Comment: C: Annotating variants using latest version fof the genome
3.5 years ago by prasundutta87 ▴ 660
0
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1
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839
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Comment: C: Annotating variants using latest version fof the genome
3.5 years ago by prasundutta87 ▴ 660
4
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5
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839
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Annotating variants using latest version fof the genome
SNP snp VCF
3.5 years ago by prasundutta87 ▴ 660
1
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0
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2.3k
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Comment: C: Identifying Private SNPs between multi sample vcf files.
3.7 years ago by prasundutta87 ▴ 660
1
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1
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1.2k
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rare SNP or SNV
snp snv
3.7 years ago by prasundutta87 ▴ 660
0
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0
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701
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find tabix version
tabix software VCF
3.7 years ago by prasundutta87 ▴ 660
0
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1
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948
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Comment: C: methylation % calculation for targeted region
3.8 years ago by prasundutta87 ▴ 660
0
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0
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948
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Comment: C: methylation % calculation for targeted region
3.8 years ago by prasundutta87 ▴ 660
0
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4
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948
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methylation % calculation for targeted region
methylation
3.8 years ago by prasundutta87 ▴ 660
0
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0
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2.9k
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Comment: C: EPIC methylation manifest GRch38 query
3.9 years ago by prasundutta87 ▴ 660
0
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1
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6.4k
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Comment: C: Is plotMDS (from limma package) a PCA (Principal Component Analysis) or a PCoA (
updated 3.9 years ago by 82k • written 3.9 years ago by ▴ 660
0
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1
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2.1k
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Comment: C: query regarding using manifest and annotation in Minfi (EPIC Methylation array a
4.0 years ago by prasundutta87 ▴ 660
0
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2
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2.1k
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query regarding using manifest and annotation in Minfi (EPIC Methylation array analysis)
R Minfi EPIC array Methylation
updated 3.1 years ago by • 0 • written 4.0 years ago by ▴ 660
0
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0
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763
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Comment: C: array jobs accessing one binary in population genetics software
4.1 years ago by prasundutta87 ▴ 660
1
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2
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763
views
array jobs accessing one binary in population genetics software
population genetics software SGE
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 660
260 results • Page 2 of 6
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