Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
1
reply
551
views
Comment: Comment: VEP filtering query
4 months ago by prasundutta87 ▴ 660
0
votes
1
reply
551
views
Comment: Comment: VEP filtering query
4 months ago by prasundutta87 ▴ 660
2
votes
4
replies
551
views
VEP filtering query
ensembl-vep
4 months ago by prasundutta87 ▴ 660
0
votes
1
reply
1.8k
views
Comment: Comment: Which minimap2 parameters to set while performing mapping to avoid such mismatch
8 months ago by prasundutta87 ▴ 660
1
vote
0
replies
1.2k
views
Comment: Comment: Coverage histogram query
8 months ago by prasundutta87 ▴ 660
0
votes
1
reply
1.2k
views
Comment: Comment: Coverage histogram query
8 months ago by prasundutta87 ▴ 660
0
votes
1
reply
1.2k
views
Comment: Comment: Coverage histogram query
8 months ago by prasundutta87 ▴ 660
0
votes
0
replies
1.2k
views
Comment: Comment: Coverage histogram query
8 months ago by prasundutta87 ▴ 660
0
votes
1
reply
1.2k
views
Comment: Comment: Coverage histogram query
8 months ago by prasundutta87 ▴ 660
1
vote
10
replies
1.2k
views
Coverage histogram query
Alignment
8 months ago by prasundutta87 ▴ 660
0
votes
1
reply
677
views
Comment: Comment: I need help with a methyl array data analysis
11 months ago by prasundutta87 ▴ 660
0
votes
0
replies
612
views
Comment: Comment: best practice to choose AF threshold based on population number
13 months ago by prasundutta87 ▴ 660
0
votes
2
replies
612
views
best practice to choose AF threshold based on population number
VCF AF allele-frequency
13 months ago by prasundutta87 ▴ 660
0
votes
0
replies
845
views
Comment: Comment: Very high coverage Nanopore alignment Hg38
13 months ago by prasundutta87 ▴ 660
0
votes
0
replies
980
views
Comment: Comment: VCF file filter for breakpoints
14 months ago by prasundutta87 ▴ 660
1
vote
1
reply
980
views
Comment: Comment: VCF file filter for breakpoints
14 months ago by prasundutta87 ▴ 660
0
votes
0
replies
995
views
Comment: Comment: Sample Level Filtering During GATK Germline Short Variant Discovery
14 months ago by prasundutta87 ▴ 660
0
votes
0
replies
328
views
snpeff annotation query
snpeff structural-variation VCF
updated 14 months ago by 43k • written 14 months ago by ▴ 660
0
votes
0
replies
890
views
Comment: Comment: alternate allele frequency and minor allele frequency
18 months ago by prasundutta87 ▴ 660
0
votes
2
replies
890
views
alternate allele frequency and minor allele frequency
rare common SNV SV VCF
18 months ago by prasundutta87 ▴ 660
0
votes
0
replies
911
views
Answer: Answer: How to parse the output file of snpEFF
20 months ago by prasundutta87 ▴ 660
2
votes
0
replies
11k
views
Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
20 months ago by prasundutta87 ▴ 660
1
vote
2
replies
11k
views
Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
21 months ago by prasundutta87 ▴ 660
4
votes
11
replies
11k
views
Correct way to calculate VAF (Variant allele fraction) from a VCF file
VCF snp
20 months ago by prasundutta87 ▴ 660
0
votes
0
replies
302
views
Tool for mode of inheritance based filtering for structural variants
StructuralVariants genotypes SNVs trio modeOfInheritance
2.1 years ago by prasundutta87 ▴ 660
0
votes
1
reply
1.0k
views
Comment: Comment: How to run fastqc for 500 raw sequence reads (100 single end and 400 paired end
2.1 years ago by prasundutta87 ▴ 660
0
votes
0
replies
4.4k
views
Comment: Comment: RNA Seq data network analysis
2.3 years ago by prasundutta87 ▴ 660
2
votes
2
replies
2.9k
views
EPIC methylation manifest GRch38 query
methylation coordinates EPIC bedgraph CpG
updated 2.3 years ago by ▴ 10 • written 3.9 years ago by ▴ 660
0
votes
0
replies
423
views
query on filtering/dropping samples based on total reads (yield)
paired-end fastq Illumina
2.5 years ago by prasundutta87 ▴ 660
0
votes
0
replies
1.5k
views
Comment: Comment: EPIC array data - How to find the total number of genes in the array?
2.5 years ago by prasundutta87 ▴ 660
0
votes
1
reply
1.5k
views
Answer: Answer: EPIC array data - How to find the total number of genes in the array?
2.5 years ago by prasundutta87 ▴ 660
0
votes
0
replies
2.0k
views
Comment: Comment: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
votes
1
reply
2.0k
views
Comment: Comment: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
votes
1
reply
2.0k
views
Comment: Comment: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
votes
1
reply
2.0k
views
Comment: Comment: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
votes
1
reply
2.0k
views
Answer: Answer: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
votes
0
replies
585
views
Answer: Answer: calculation of gene coverage
2.5 years ago by prasundutta87 ▴ 660
0
votes
1
reply
592
views
Structural variation nomenclature ambiguity
Structural_Variation
updated 2.6 years ago by ▴ 520 • written 2.6 years ago by ▴ 660
0
votes
0
replies
1.1k
views
Comment: Comment: Annotate Structural variants with population specific allele frequency values
2.7 years ago by prasundutta87 ▴ 660
0
votes
2
replies
1.1k
views
Annotate Structural variants with population specific allele frequency values
allele Structural_variation VEP frequency VCF
2.7 years ago by prasundutta87 ▴ 660
1
vote
1
reply
2.1k
views
Answer: Answer: Extract CDS from maker gff
2.9 years ago by prasundutta87 ▴ 660
0
votes
0
replies
1.4k
views
Comment: Comment: VEP chromosome name query
2.9 years ago by prasundutta87 ▴ 660
3
votes
6
replies
1.4k
views
VEP chromosome name query
ensembl VCF annotation VEP
2.9 years ago by prasundutta87 ▴ 660
0
votes
0
replies
1.4k
views
Comment: Comment: VEP chromosome name query
2.9 years ago by prasundutta87 ▴ 660
0
votes
1
reply
1.4k
views
Comment: Comment: VEP chromosome name query
2.9 years ago by prasundutta87 ▴ 660
1
vote
0
replies
640
views
Comment: Comment: How to calculate the *necessary* sequencing depth for a SNP
2.9 years ago by prasundutta87 ▴ 660
0
votes
0
replies
519
views
About Structural variation genotypes
variants Structural-variants variant-calling genotypes
updated 6 months ago by 43k • written 2.9 years ago by ▴ 660
0
votes
1
reply
1.7k
views
Comment: Comment: Core Dumped - STAR mapping
3.0 years ago by prasundutta87 ▴ 660
1
vote
1
reply
1.4k
views
Comment: Comment: Masking sites in a vcf file
3.0 years ago by prasundutta87 ▴ 660
0
votes
1
reply
1.7k
views
Comment: Comment: Core Dumped - STAR mapping
3.0 years ago by prasundutta87 ▴ 660
260 results • Page 1 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6