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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
14 months ago by kk.mahsa ▴ 140
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1.2k
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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
14 months ago by kk.mahsa ▴ 140
0
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5
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1.2k
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How to remove homozygous reference genotypes from multi-sample vcf file based on a threshold
CNV VCF Genotype
updated 14 months ago by ★ 3.8k • written 14 months ago by ▴ 140
0
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0
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812
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
15 months ago by kk.mahsa ▴ 140
0
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1
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812
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Comment: Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
15 months ago by kk.mahsa ▴ 140
1
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4
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812
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Missing samples in the output vcf file created using GenotypeGVCFs in GATK
SNP GATK
15 months ago by kk.mahsa ▴ 140
0
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0
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518
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Comment: Comment: f-index in treemix
15 months ago by kk.mahsa ▴ 140
0
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1
reply
518
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f-index in treemix
treemix introgression f-index
15 months ago by kk.mahsa ▴ 140
0
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0
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612
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Comment: Comment: signature of selection
2.3 years ago by kk.mahsa ▴ 140
0
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2
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612
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signature of selection
WGS
2.3 years ago by kk.mahsa ▴ 140
24
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15
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19k
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7 follow
how can I remove duplicated variants from vcf file?
SNP vcf
updated 9 months ago by 43k • written 6.8 years ago by ▴ 140
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0
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385
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detection of signature selection using relative individuals
selection WGS
2.4 years ago by kk.mahsa ▴ 140
0
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0
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789
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Comment: Comment: Counting the number of major and minor alleles
2.4 years ago by kk.mahsa ▴ 140
0
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2
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789
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Counting the number of major and minor alleles
VCF Allele SNP
2.4 years ago by kk.mahsa ▴ 140
0
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0
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922
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Comment: Comment: How to convert scaffold name to chromosome number in vcf file
2.5 years ago by kk.mahsa ▴ 140
3
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2
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922
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How to convert scaffold name to chromosome number in vcf file
VCF Scaffold Chromosome
2.5 years ago by kk.mahsa ▴ 140
0
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0
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404
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PLINK map format spliiting by chromosome
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2.5 years ago by kk.mahsa ▴ 140
0
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0
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1.1k
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Comment: Comment: Error:Could not open individual file
2.6 years ago by kk.mahsa ▴ 140
0
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1
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1.1k
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Comment: Comment: Error:Could not open individual file
2.6 years ago by kk.mahsa ▴ 140
0
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4
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1.1k
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Error:Could not open individual file
Fst VCF vcftools
2.6 years ago by kk.mahsa ▴ 140
0
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0
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1.1k
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Comment: Comment: Identify most and least abundant allele (nMAJ and nMIN) for pooled heterozygosit
2.6 years ago by kk.mahsa ▴ 140
0
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0
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1.4k
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Comment: Comment: Speeding up HaplotypeCaller analysis
2.7 years ago by kk.mahsa ▴ 140
0
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1
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1.4k
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Comment: Comment: Speeding up HaplotypeCaller analysis
2.7 years ago by kk.mahsa ▴ 140
1
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5
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1.4k
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Speeding up HaplotypeCaller analysis
Linux CPU HaplotypeCaller
updated 2.7 years ago by 161k • written 2.7 years ago by ▴ 140
0
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2
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2.0k
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
2.7 years ago by kk.mahsa ▴ 140
1
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6
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2.0k
views
Use of GenotypeGVCFs in population genetic studies
WGS Introgression GenotypeGVCFs ADMIXTURE GATK
updated 2.7 years ago by ★ 1.2k • written 2.7 years ago by ▴ 140
0
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1
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842
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Comment: C: Annotation of probes using annotated genome
3.4 years ago by kk.mahsa ▴ 140
0
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3
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842
views
Annotation of probes using annotated genome
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3.4 years ago by kk.mahsa ▴ 140
0
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0
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909
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Comment: C: Official software repository
4.4 years ago by kk.mahsa ▴ 140
6
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3
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909
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Official software repository
SNP software repository
4.4 years ago by kk.mahsa ▴ 140
0
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0
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650
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A practical workflow for microarray gene expression Meta analysis
Meta analysis Microarray Gene expression
4.4 years ago by kk.mahsa ▴ 140
0
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2
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16k
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Comment: C: converting fna format to fasta
updated 5.0 years ago by 43k • written 6.9 years ago by ▴ 140
2
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3
replies
1.8k
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visualization of identified SSRs
SSR visualize
updated 5.1 years ago by 20 • written 6.5 years ago by ▴ 140
0
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1
reply
2.6k
views
diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
Picard FastQC BAM READs
5.5 years ago by kk.mahsa ▴ 140
0
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1
reply
1.2k
views
how to find mammalian-wide interspersed repeats (MIRs) for different mammalian
MIRs Repetetive elements
updated 6.1 years ago by 20 • written 6.6 years ago by ▴ 140
0
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0
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1.1k
views
Comment: C: how to get common variants between two species?
6.3 years ago by kk.mahsa ▴ 140
1
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2
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1.1k
views
how to get common variants between two species?
SNP next-gen common variant
updated 6.3 years ago by ★ 1.4k • written 6.3 years ago by ▴ 140
4
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2
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2.1k
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CNV detection using beakdancer and SVDetect
SVDetect breakdancer CNV
updated 6.4 years ago by ★ 2.9k • written 6.5 years ago by ▴ 140
0
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1
reply
3.7k
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bgzf_read error during samtools run
software error samtools cnv-seq bgzf
updated 6.5 years ago by 104k • written 6.5 years ago by ▴ 140
2
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2
replies
3.4k
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SRA submission problem
SRA Aspera connect NCBI
6.5 years ago by kk.mahsa ▴ 140
5
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1
reply
2.7k
views
how can i inter into my root directory in SRA (NCBI) and create subdirectory?
SRA NCBI
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 140
4
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0
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2.7k
views
Comment: C: how can i inter into my root directory in SRA (NCBI) and create subdirectory?
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 140
0
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0
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4.1k
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Comment: C: combine two fastq file (paired end) to submit in NCBI
6.5 years ago by kk.mahsa ▴ 140
0
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1
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4.1k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
6.5 years ago by kk.mahsa ▴ 140
0
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1
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1.4k
views
Comment: A: dividing fastq file into 2 separate files
6.5 years ago by kk.mahsa ▴ 140
0
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0
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4.1k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
6.5 years ago by kk.mahsa ▴ 140
0
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1
reply
4.1k
views
Comment: C: combine two fastq file (paired end) to submit in NCBI
updated 6.5 years ago by 142k • written 6.5 years ago by ▴ 140
4
votes
7
replies
4.1k
views
combine two fastq file (paired end) to submit in NCBI
SRA fastq
updated 6.6 years ago by 142k • written 6.6 years ago by ▴ 140
0
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0
replies
4.9k
views
Comment: C: Convert repeat masked out file to bed file format
6.8 years ago by kk.mahsa ▴ 140
0
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0
replies
2.8k
views
Comment: C: how to combine two output of RepeatMasker?
6.8 years ago by kk.mahsa ▴ 140
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