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GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
5 months ago by
benformatics
3.9k
3
votes
5
replies
1.5k
views
How to remove un-paired reads from BAM after filtering?
picard
samtools
updated 10 months ago by
Ram
43k • written 15 months ago by
benformatics
3.9k
1
vote
3
replies
653
views
resolving specific clusters from data (spectral clustering)
clustering
updated 22 months ago by
Mensur Dlakic
★ 27k • written 22 months ago by
benformatics
3.9k
1
vote
2
replies
1.4k
views
EBI European Nucleotide Archive (ERA) aspera access broken
elixir
ebi
ena
updated 2.5 years ago by
i.sudbery
19k • written 2.5 years ago by
benformatics
3.9k
4
votes
4
replies
2.2k
views
Finding the Refseq Soft-masked Regions
IGV
Refseq
updated 4.0 years ago by
vkkodali_ncbi
★ 3.7k • written 4.1 years ago by
benformatics
3.9k
3
votes
3
replies
2.0k
views
Check my work? Hyper geometric test on enrichment between iCLIP sites across experiments
hypergeometric
enrichment
updated 7.5 years ago by
michael.ante
★ 3.8k • written 7.5 years ago by
benformatics
3.9k
0
votes
0
replies
1.8k
views
".1" being appended to Ensembl Gene IDs from UCSC txdb (dm6)
org.db
biomart
ucsc
ENSEMBL
R
updated 8.1 years ago by
GouthamAtla
12k • written 8.2 years ago by
benformatics
3.9k
0
votes
0
replies
1.4k
views
tophat-fusion-post multiple transcript fusions in a single hit?
RNA-Seq
tophat-fusion
chimera
updated 21 months ago by
Ram
43k • written 8.2 years ago by
benformatics
3.9k
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