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216
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Answer: Answer: Exon often targeted by mobile element insertions?
10 weeks ago by benformatics 3.9k
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286
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GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
5 months ago by benformatics 3.9k
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478
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Comment: Comment: STAR GeneCounts for most genes are 0
5 months ago by benformatics 3.9k
2
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1
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801
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Answer: Answer: Paired-end RNA seq (NextSeq2000): 1-3% if R2 reads are only contain G bases
6 months ago by benformatics 3.9k
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503
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Comment: Comment: unbiased clustering of these top 50 genes in seurat
6 months ago by benformatics 3.9k
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448
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Answer: Answer: How to plot two categorical variables in ggridges?
6 months ago by benformatics 3.9k
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448
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Comment: Comment: How to plot two categoric variables in ggridges?
6 months ago by benformatics 3.9k
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1
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1.1k
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Answer: Answer: Map genome positions onto protein coordinates?
6 months ago by benformatics 3.9k
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0
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530
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Answer: Answer: Get discordant read pairs from bam
6 months ago by benformatics 3.9k
1
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1
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3.5k
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Comment: Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
6 months ago by benformatics 3.9k
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1
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1.4k
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Answer: Answer: Discussion: Uploading terrabytes of data to NCBI SRA
8 months ago by benformatics 3.9k
1
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695
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Answer: Answer: insert size in bam file do not make sense
9 months ago by benformatics 3.9k
5
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0
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1.2k
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Answer: Answer: How to import a gtf file in R so that it appears in tabular format as if it were
9 months ago by benformatics 3.9k
1
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1
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478
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Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
9 months ago by benformatics 3.9k
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0
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844
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Answer: Answer: How to label clusters from a UMAP
9 months ago by benformatics 3.9k
1
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0
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709
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Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
9 months ago by benformatics 3.9k
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1
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2.2k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
9 months ago by benformatics 3.9k
1
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0
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1.3k
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Answer: Answer: I want to rename sequence headers
updated 9 months ago by 43k • written 9 months ago by 3.9k
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1
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994
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
9 months ago by benformatics 3.9k
1
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1
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994
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
9 months ago by benformatics 3.9k
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0
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1.8k
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Comment: Comment: monocle single cell differential expression: error message for HSMM <- estimateD
9 months ago by benformatics 3.9k
0
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1
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978
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Comment: Comment: gene id
10 months ago by benformatics 3.9k
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1
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978
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Comment: Comment: gene id
10 months ago by benformatics 3.9k
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0
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538
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Answer: Answer: 3' Single Cell RNA Seq Reads mapping to promoter region of gene
10 months ago by benformatics 3.9k
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0
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936
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Comment: Comment: Analize RNA-seq data using Hisat2
10 months ago by benformatics 3.9k
1
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0
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719
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Comment: Comment: Filtering mitochondrial reads from ATAC-Seq aligned reads- what to do with reads
10 months ago by benformatics 3.9k
1
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0
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693
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Comment: Comment: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
11 months ago by benformatics 3.9k
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1
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1.0k
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Comment: Comment: error in Genome Mepping by BWA tools in Linux
12 months ago by benformatics 3.9k
2
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0
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661
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Answer: Answer: Fastqs different lanes
12 months ago by benformatics 3.9k
0
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0
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679
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Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
12 months ago by benformatics 3.9k
0
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0
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1.0k
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Comment: Comment: How do I project known tSNE coordinates onto SeuratObject
12 months ago by benformatics 3.9k
1
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1
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1.0k
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Answer: Answer: How do I project known tSNE coordinates onto SeuratObject
12 months ago by benformatics 3.9k
0
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1
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679
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Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
12 months ago by benformatics 3.9k
0
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1
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4.3k
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Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by benformatics 3.9k
1
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1
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4.3k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by benformatics 3.9k
0
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0
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951
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Comment: Comment: Remove string from Seurat object metadata
12 months ago by benformatics 3.9k
0
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1
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951
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Answer: Answer: Remove string from Seurat object metadata
12 months ago by benformatics 3.9k
1
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1
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4.3k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by benformatics 3.9k
0
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1
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4.4k
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Comment: Comment: What are the advantages of using the T2T as a reference vs GRCh38 today?
12 months ago by benformatics 3.9k
0
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0
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551
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Comment: Comment: Merged BAM has more reads than sum of parts
12 months ago by benformatics 3.9k
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1
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1.5k
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Comment: Comment: Can you swap reference genome releases ?
12 months ago by benformatics 3.9k
0
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0
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620
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Comment: Comment: Non-zero expression counts from deleted genes
12 months ago by benformatics 3.9k
0
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0
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733
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Comment: Comment: R script error R aborted or encountered a fatal error
12 months ago by benformatics 3.9k
0
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1
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620
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Comment: Comment: Non-zero expression counts from deleted genes
12 months ago by benformatics 3.9k
0
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0
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741
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Answer: Answer: divide coordinates into equal number of bins
12 months ago by benformatics 3.9k
0
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0
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812
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Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
13 months ago by benformatics 3.9k
1
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0
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1.2k
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Answer: Answer: Recommendation for (Alternative) Splicing analysis packages for bulk RNA-seq da
13 months ago by benformatics 3.9k
3
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0
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696
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Comment: Comment: advice on course selection for a bioinformatics career.
13 months ago by benformatics 3.9k
0
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0
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618
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Comment: Comment: Processing fastqs generated by inDrop protocol
13 months ago by benformatics 3.9k
1
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0
replies
1.1k
views
Comment: Comment: samtools idxstats not removing ChrM
13 months ago by benformatics 3.9k
473 results • Page 1 of 10
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