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2
votes
1
reply
1.3k
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what is difference between -i and -ibam in genomCoverage?
bedtools deeptools bamCoverage genomeCoverage
updated 5.2 years ago by 82k • written 5.2 years ago by ▴ 350
7
votes
8
replies
1.2k
views
Separate lines based on some character?
R linux fasta
updated 5.2 years ago by 11k • written 5.2 years ago by ▴ 350
0
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0
replies
1.2k
views
Comment: C: Separate lines based on some character?
5.2 years ago by star ▴ 350
0
votes
1
reply
1.2k
views
Comment: C: Separate lines based on some character?
5.2 years ago by star ▴ 350
0
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1
reply
5.8k
views
Comment: C: bedtools intersect error?
5.2 years ago by star ▴ 350
9
votes
6
replies
1.5k
views
Merge the same coordinate in a table?
merge intersect bedtools genomics
updated 5.2 years ago by 11k • written 5.2 years ago by ▴ 350
0
votes
0
replies
5.8k
views
Comment: C: bedtools intersect error?
5.2 years ago by star ▴ 350
0
votes
1
reply
5.8k
views
Comment: C: bedtools intersect error?
5.2 years ago by star ▴ 350
0
votes
1
reply
5.8k
views
Comment: C: bedtools intersect error?
5.2 years ago by star ▴ 350
0
votes
1
reply
5.8k
views
Comment: C: bedtools intersect error?
5.2 years ago by star ▴ 350
0
votes
2
replies
5.8k
views
Comment: C: bedtools intersect error?
5.2 years ago by star ▴ 350
12
votes
14
replies
5.8k
views
bedtools intersect error?
ChIP-Seq bedtools intersect
5.2 years ago by star ▴ 350
10
votes
6
replies
7.1k
views
MACS2 option for ATAC seq?
ATAC-seq Peak-calling MACS2 ChIP-seq ENDCODE
5.2 years ago by star ▴ 350
1
vote
1
reply
7.1k
views
Comment: C: MACS2 option for ATAC seq?
5.3 years ago by star ▴ 350
1
vote
0
replies
4.3k
views
Comment: C: shall we consider -- keep-dup all when we removed duplication?
5.3 years ago by star ▴ 350
7
votes
4
replies
4.3k
views
shall we consider -- keep-dup all when we removed duplication?
ChIP-Seq MACS2 duplicate peak-calling
updated 5.3 years ago by 3.9k • written 5.3 years ago by ▴ 350
0
votes
1
reply
3.2k
views
Comment: C: Normalizing ChIP-seq and ATAC-seq data?
5.3 years ago by star ▴ 350
1
vote
5
replies
3.2k
views
Normalizing ChIP-seq and ATAC-seq data?
ChIP-Seq alignment normalization MACS2
5.3 years ago by star ▴ 350
0
votes
1
reply
3.2k
views
Comment: C: Normalizing ChIP-seq and ATAC-seq data?
5.3 years ago by star ▴ 350
8
votes
12
replies
7.4k
views
why fastq-dump doesn`t work?
sra prefetch fastq-dump
updated 5.3 years ago by 82k • written 5.3 years ago by ▴ 350
0
votes
0
replies
7.4k
views
Comment: C: why fastq-dump doesn`t work?
5.3 years ago by star ▴ 350
0
votes
1
reply
7.4k
views
Comment: C: why fastq-dump doesn`t work?
updated 5.3 years ago by 82k • written 5.3 years ago by ▴ 350
0
votes
1
reply
7.4k
views
Comment: C: why fastq-dump doesn`t work?
5.3 years ago by star ▴ 350
0
votes
2
replies
7.4k
views
Comment: C: why fastq-dump doesn`t work?
5.3 years ago by star ▴ 350
0
votes
1
reply
7.4k
views
Comment: C: why fastq-dump doesn`t work?
5.3 years ago by star ▴ 350
0
votes
1
reply
1.8k
views
Comment: C: why reads align to other coordinates?
5.3 years ago by star ▴ 350
0
votes
0
replies
1.8k
views
Comment: C: why reads align to other coordinates?
5.3 years ago by star ▴ 350
0
votes
1
reply
1.8k
views
Comment: C: why reads align to other coordinates?
5.3 years ago by star ▴ 350
0
votes
1
reply
1.8k
views
Comment: C: why reads align to other coordinates?
5.3 years ago by star ▴ 350
0
votes
1
reply
1.8k
views
Comment: C: why reads align to other coordinates?
5.3 years ago by star ▴ 350
0
votes
1
reply
1.8k
views
Comment: C: why reads align to other coordinates?
5.3 years ago by star ▴ 350
10
votes
13
replies
1.8k
views
why reads align to other coordinates?
RNA-Seq alignment bowtie2 align tophat
5.3 years ago by star ▴ 350
4
votes
6
replies
3.3k
views
is there any statistical way to analysis two groups without replications?
statistics geneexpression
updated 5.3 years ago by 19k • written 5.3 years ago by ▴ 350
0
votes
0
replies
3.3k
views
Comment: C: is there any statistical way to analysis two groups without replications?
5.3 years ago by star ▴ 350
0
votes
1
reply
3.3k
views
Comment: C: is there any statistical way to analysis two groups without replications?
5.3 years ago by star ▴ 350
19
votes
5
replies
10.0k
views
Add `chr` to first column of specific rows?
RNA-Seq R alignment
updated 5.4 years ago by ★ 2.0k • written 5.4 years ago by ▴ 350
0
votes
3
replies
2.5k
views
bowtie2-align exited with value 139 ?
ChIP-Seq RNA-Seq alignment bowtie2 software error
5.5 years ago by star ▴ 350
0
votes
0
replies
2.5k
views
Comment: C: bowtie2-align exited with value 139 ?
5.5 years ago by star ▴ 350
10
votes
4
replies
5.2k
views
How to extract mapping features of multiple samples in one output?
bowtie2 mapping multiqc ChIP-Seq RNA-Seq
updated 5.5 years ago by 35k • written 5.5 years ago by ▴ 350
7
votes
5
replies
6.1k
views
Can be merged biological replicates?
ChIP-Seq MACS2 ATAC-seq RNA-Seq Peak-calling
updated 5.6 years ago by ▴ 240 • written 5.7 years ago by ▴ 350
1
vote
2
replies
2.1k
views
How can find LD between rows (SNPs) two by two?
linkage-Disequilibrium genomics R
updated 14 months ago by 43k • written 8.2 years ago by ▴ 350
3
votes
3
replies
3.3k
views
How can get MAF for set of SNPs from each population based on 1000 Genome?
R 1000 Genome hapmap ucsc Ensembl
updated 5.7 years ago by 11k • written 8.2 years ago by ▴ 350
0
votes
1
reply
4.2k
views
How convert q-value to p-value?
R p-value q-value
updated 5.7 years ago by 43k • written 8.2 years ago by ▴ 350
21
votes
10
replies
6.8k
views
6 follow
Extract only rows with main chromosomes (1-22, X, Y) on first column?
linux grep R script
updated 5.7 years ago by 3.9k • written 5.8 years ago by ▴ 350
0
votes
0
replies
1.8k
views
Comment: C: shift direction in ATAC/DNase data?
5.7 years ago by star ▴ 350
3
votes
5
replies
1.8k
views
shift direction in ATAC/DNase data?
ChIP-Seq MACS2 ATAC-seq DNase-seq
5.7 years ago by star ▴ 350
2
votes
2
replies
1.3k
views
why is there still duplication after extracting aligned read exactly 1 time?
RNA-Seq ChIP-Seq alignment duplicate samtools
updated 5.7 years ago by 82k • written 5.7 years ago by ▴ 350
3
votes
3
replies
1.3k
views
How to filter/edit some BED lines.
linux bedtools
updated 5.7 years ago by 20 • written 5.9 years ago by ▴ 350
1
vote
4
replies
1.2k
views
merge multiple data with multiple columns?
linux script
5.8 years ago by star ▴ 350
0
votes
1
reply
1.2k
views
Comment: C: merge multiple data with multiple columns?
5.8 years ago by star ▴ 350
188 results • Page 3 of 4
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