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Answer: Answer: Two references 1. genome 2. plasmid for bowtie2
3 days ago by GenoMax 142k
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2
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673
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Answer: Answer: How many reads for WGS Sequencing?
4 days ago by GenoMax 142k
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294
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Answer: Answer: genome assembly records not present in assembly_summary.txt
6 days ago by GenoMax 142k
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161
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Answer: Answer: Including plasmid in transcriptome assemblies
8 days ago by GenoMax 142k
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2
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333
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Answer: Answer: How to trim transcripts using information from NCBI contamination screen report
9 days ago by GenoMax 142k
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755
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Answer: Answer: Redirection of Duplicate PMIDs
9 days ago by GenoMax 142k
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755
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Answer: Answer: Redirection of Duplicate PMIDs
9 days ago by GenoMax 142k
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216
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Answer: Answer: Genbank vs SRA
9 days ago by GenoMax 142k
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300
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Answer: Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
12 days ago by GenoMax 142k
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591
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Answer: Answer: Duplicate marking, read names, and the SRA
12 days ago by GenoMax 142k
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284
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Answer: Answer: 10x VDJ (TCR/BCR) BAM to fastq
14 days ago by GenoMax 142k
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2
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482
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Answer: Answer: biomaRt error for different R version
15 days ago by GenoMax 142k
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406
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Answer: Answer: Ensembl assembly choice for DNA reference with no combined primary assembly
20 days ago by GenoMax 142k
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497
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Answer: Answer: Having trouble building VG in Ubuntu
21 days ago by GenoMax 142k
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247
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Answer: Answer: Error during demultiplexing by bcl2fastq
21 days ago by GenoMax 142k
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1
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201
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Answer: Answer: fmols for nanopore library loading
22 days ago by GenoMax 142k
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370
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Answer: Answer: How to use pre-alignments by bowtie2
22 days ago by GenoMax 142k
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204
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Answer: Answer: which reference does remora tests/data use?
27 days ago by GenoMax 142k
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543
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Answer: Answer: Getting refseq assembly accession numbers from list of species names
27 days ago by GenoMax 142k
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259
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Answer: Answer: SRA PROBLEM
28 days ago by GenoMax 142k
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1
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368
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Answer: Answer: WGCNA website
28 days ago by GenoMax 142k
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418
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Answer: Answer: Need information on how filterAndTrim function from the DADA2 pipeline was deve
28 days ago by GenoMax 142k
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277
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Answer: Answer: What is the relationship between Illumina P5 P7, universal adapters, and TruSeq
28 days ago by GenoMax 142k
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199
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Answer: Answer: How to fasten FTP file type download speed
29 days ago by GenoMax 142k
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379
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Answer: Answer: Bowtie2 mapping is slow
29 days ago by GenoMax 142k
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214
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Answer: Answer: Is refSeq table DNA or RNA coordinate?
29 days ago by GenoMax 142k
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176
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Answer: Answer: NCBI CLI Download all proteins from Taxid
4 weeks ago by GenoMax 142k
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2
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323
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Answer: Answer: How do I find up-to-date gene symbols for outdated names
4 weeks ago by GenoMax 142k
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505
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Answer: Answer: Installing Cell Ranger
4 weeks ago by GenoMax 142k
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251
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Answer: Answer: Issue with making local BLAST database
5 weeks ago by GenoMax 142k
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244
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Answer: Answer: Location of NCBI ftp site changed?
5 weeks ago by GenoMax 142k
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766
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Answer: Answer: Facing problem with fetching metadata from GEO
5 weeks ago by GenoMax 142k
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224
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Answer: Answer: genome.fa to indix files to use it in rna-seq analysis
5 weeks ago by GenoMax 142k
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472
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Answer: Answer: RNAseq
5 weeks ago by GenoMax 142k
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393
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Answer: Answer: Combining and Forward and Reverse Reads
6 weeks ago by GenoMax 142k
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262
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Answer: Answer: Using multiple reference genomes for alignment in dorado?
6 weeks ago by GenoMax 142k
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313
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Answer: Answer: Read length distribution of whole genome sequnces of human
6 weeks ago by GenoMax 142k
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399
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Answer: Answer: How to find gene ids for Pfam ids?
6 weeks ago by GenoMax 142k
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0
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171
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Answer: Answer: turning old shell ncbi querys into url querys
6 weeks ago by GenoMax 142k
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2
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447
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Answer: Answer: blastn: 2.2.31+ Package: blast 2.2.31, build Jun 2 2015 10:47:46
6 weeks ago by GenoMax 142k
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284
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Answer: Answer: Error executing MEGAHIT
6 weeks ago by GenoMax 142k
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1
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712
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Answer: Answer: Can't properly use GATK Mutect2 to call somatic variants from my tumor/normal sa
7 weeks ago by GenoMax 142k
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1
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274
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Answer: Answer: Reformatting Merged and Unmerged Paired-End Files
7 weeks ago by GenoMax 142k
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237
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Answer: Answer: Query Name too long - samtools
7 weeks ago by GenoMax 142k
3
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206
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Answer: Answer: Get read counts without GTF/GFF files
7 weeks ago by GenoMax 142k
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1
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745
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Answer: Answer: bbmap reds lenght from fastq
7 weeks ago by GenoMax 142k
4
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1
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260
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Answer: Answer: GFF reformator
7 weeks ago by GenoMax 142k
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615
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Answer: Answer: Getting fasta file from the VCF after variant calling
8 weeks ago by GenoMax 142k
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434
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Answer: Answer: RNA indexing using STAR error
8 weeks ago by GenoMax 142k
2
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0
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619
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Answer: Answer: Why many organisms even though they possess mitochondrial DNA (mtDNA), it is not
8 weeks ago by GenoMax 142k
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