genome.fa to indix files to use it in rna-seq analysis

Question

[Hasan_Daaboul]

In order to alighn RNA seq data using hisat2, how to make index files from the genome.fa file?

Answer 1

[GenoMax]

How-to page for hisat2 details how to do this: http://daehwankimlab.github.io/hisat2/howto/