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2.3k
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Comment: C: bowtie2 summary looks very weird. Neither concordant nor discordant.
6.7 years ago by James Ashmore ★ 3.4k
0
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1
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9.5k
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Comment: C: Truncated sam file - Parse error
6.7 years ago by James Ashmore ★ 3.4k
0
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0
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1.9k
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Comment: C: Merging bed intervals within a group
6.7 years ago by James Ashmore ★ 3.4k
0
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1
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1.9k
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Comment: C: Merging bed intervals within a group
6.7 years ago by James Ashmore ★ 3.4k
0
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1
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3.2k
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Comment: C: extract the aligned read names and their reference fasta sequence name
6.7 years ago by James Ashmore ★ 3.4k
1
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1
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3.1k
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Comment: C: BETA for RNA-Seq and ChIP-Seq Data Integration
6.8 years ago by James Ashmore ★ 3.4k
2
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0
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12k
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Comment: C: Retrieving data from NCBI GEO and RNA-Seq Data Analysis
6.8 years ago by James Ashmore ★ 3.4k
1
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0
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3.4k
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Comment: C: How to merge bedGraph records which are next to each other and have the same sco
6.8 years ago by James Ashmore ★ 3.4k
0
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1
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3.4k
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Comment: C: How to merge bedGraph records which are next to each other and have the same sco
6.8 years ago by James Ashmore ★ 3.4k
2
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1
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1.5k
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Comment: C: Trimming adapters with custom scoring
6.8 years ago by James Ashmore ★ 3.4k
0
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0
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2.7k
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Comment: C: Can we predict/quantify transcription factor activation using gene expression da
6.8 years ago by James Ashmore ★ 3.4k
0
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1
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4.7k
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Comment: C: macs2 normalization on broadPeak
6.8 years ago by James Ashmore ★ 3.4k
0
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0
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1.2k
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Comment: C: How to deal with several samples from one individuals in the expression level an
6.8 years ago by James Ashmore ★ 3.4k
2
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1
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2.5k
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Comment: C: Does read counts for ATAC-seq differential detection make sense?
6.8 years ago by James Ashmore ★ 3.4k
1
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1
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3.9k
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Comment: C: Calculate the fraction of genome that is feature X
6.8 years ago by James Ashmore ★ 3.4k
1
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0
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11k
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Comment: C: Best databases for Chip-Seq
6.8 years ago by James Ashmore ★ 3.4k
0
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0
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3.9k
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Comment: C: Bedtools intersect QTL animalgenome
6.8 years ago by James Ashmore ★ 3.4k
0
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0
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8.8k
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Comment: C: Removing PCR duplicates - fastq or BAM?
6.8 years ago by James Ashmore ★ 3.4k
2
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1
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1.9k
views
Comment: C: How to automatically find the right species name when there are typos, using Ent
6.8 years ago by James Ashmore ★ 3.4k
0
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1
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8.8k
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Comment: C: Removing PCR duplicates - fastq or BAM?
6.8 years ago by James Ashmore ★ 3.4k
3
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1
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7.8k
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Comment: C: Need help : cut the fasta sequences from a specific region
6.8 years ago by James Ashmore ★ 3.4k
0
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1
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7.8k
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Comment: C: Need help : cut the fasta sequences from a specific region
6.8 years ago by James Ashmore ★ 3.4k
0
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0
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7.8k
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Comment: C: Need help : cut the fasta sequences from a specific region
6.8 years ago by James Ashmore ★ 3.4k
0
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0
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2.0k
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Comment: C: Any advanced and really structured course on Python language or My Sql or R or U
6.8 years ago by James Ashmore ★ 3.4k
0
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0
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7.8k
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Comment: C: Need help : cut the fasta sequences from a specific region
6.8 years ago by James Ashmore ★ 3.4k
1
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0
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2.9k
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Comment: C: Multiple group model matrix in rna-seq DE analysis
6.8 years ago by James Ashmore ★ 3.4k
0
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0
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12k
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Comment: C: Shifting reads for ATAC-seq alignments
7.0 years ago by James Ashmore ★ 3.4k
1
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0
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5.0k
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Comment: C: Appropriate statistical test for overlap analyses?
7.1 years ago by James Ashmore ★ 3.4k
0
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0
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3.8k
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Comment: C: Reads not assigned to features in featureCounts software
7.1 years ago by James Ashmore ★ 3.4k
0
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0
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6.7k
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Comment: C: Speed up Picard MarkDuplicates or any better software?
7.1 years ago by James Ashmore ★ 3.4k
1
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1
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4.3k
views
Comment: C: Calling peaks with macs2 if not all replicates have a corresponding input-file
7.1 years ago by James Ashmore ★ 3.4k
0
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1
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2.1k
views
Comment: C: A code for splitting FASTA file, No output is written for the file
7.1 years ago by James Ashmore ★ 3.4k
0
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1
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2.1k
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Comment: C: Questions about LB field in SAM specification for PCR duplicate removal
7.1 years ago by James Ashmore ★ 3.4k
0
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1
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6.9k
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Comment: C: MACS2 produces different results using BAMPE and BEDPE
7.1 years ago by James Ashmore ★ 3.4k
1
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1
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6.9k
views
Comment: C: MACS2 produces different results using BAMPE and BEDPE
7.1 years ago by James Ashmore ★ 3.4k
0
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0
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1.5k
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Comment: C: Divide each fasta sequence into fragments of 200 nucleotides
7.1 years ago by James Ashmore ★ 3.4k
1
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1
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3.1k
views
Comment: C: sam-dump output is empty
7.1 years ago by James Ashmore ★ 3.4k
3
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1
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2.2k
views
Comment: C: Screen shots of text (please don't)!
7.1 years ago by James Ashmore ★ 3.4k
0
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0
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6.2k
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Comment: C: Removal of repeat and blacklist regions from ChIP-seq data
7.1 years ago by James Ashmore ★ 3.4k
0
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2
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6.2k
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Comment: C: Removal of repeat and blacklist regions from ChIP-seq data
7.1 years ago by James Ashmore ★ 3.4k
0
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1
reply
2.7k
views
Comment: C: Bowtie fails to align reads that appear in the reference sequence
7.1 years ago by James Ashmore ★ 3.4k
0
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0
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1.7k
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Comment: C: Binning the genomic regions and counting reads
7.2 years ago by James Ashmore ★ 3.4k
0
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0
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3.0k
views
Comment: C: Fast and reproducible method to downsample a count matrix to different sequencin
7.2 years ago by James Ashmore ★ 3.4k
0
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0
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2.3k
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Comment: C: Existing software to calculate RNASeq read distribution by "gene_type" (Gencode)
7.2 years ago by James Ashmore ★ 3.4k
0
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0
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3.7k
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Comment: C: Quantile normalization and variability questions
7.2 years ago by James Ashmore ★ 3.4k
2
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1
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3.7k
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Comment: C: Quantile normalization and variability questions
7.2 years ago by James Ashmore ★ 3.4k
0
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1
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1.9k
views
Comment: C: fastQC - case of the anomalous last base
7.2 years ago by James Ashmore ★ 3.4k
1
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1
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7.0k
views
Comment: C: mitochondrial blacklists ATAC-Seq
7.2 years ago by James Ashmore ★ 3.4k
0
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0
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13k
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Comment: C: Trimmomatic - unknown trimmer?
7.2 years ago by James Ashmore ★ 3.4k
0
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0
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4.0k
views
Comment: C: Different alignments rates with bwa mem (0%) and bowtie2 (82%)
7.2 years ago by James Ashmore ★ 3.4k
166 results • Page 2 of 4
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