updated 10 minutes ago by
Muhammad
•
0
•
written 2.6 years ago by
mari.johnson
•
0
1
vote
2
replies
595
views
1
vote
1
reply
247
views
0
votes
0
replies
58
views
updated 11 hours ago by
Pierre Lindenbaum
161k
•
written 11 hours ago by
Mohamed Samir
▴
20
0
votes
0
replies
70
views
14 hours ago by
Moinuddin
•
0
0
votes
1
reply
99
views
2
votes
1
reply
165
views
updated 5 hours ago by
Gordon Smyth
★
7.2k
•
written 1 day ago by
marineandriot
•
0
1
vote
1
reply
143
views
0
votes
4
replies
293
views
updated 18 hours ago by
txema.heredia
▴
130
•
written 2 days ago by
Ngrin
•
0
0
votes
4
replies
275
views
19 hours ago by
mavy
▴
10
1
vote
16
replies
723
views
updated 13 hours ago by
GenoMax
142k
•
written 3 days ago by
hophuquy0944
•
0
0
votes
5
replies
292
views
1
vote
8
replies
446
views
updated 23 hours ago by
Alex Reynolds
35k
•
written 5 days ago by
ntsopoul
▴
60
1
vote
4
replies
311
views
0
votes
2
replies
290
views
updated 6 hours ago by
anton.i.petrov
•
0
•
written 3 months ago by
Larissa
•
0
Recent Votes
Recent Locations •
All
Chile, 3 minutes ago
Bangladesh, 5 minutes ago
USA, 7 minutes ago
United States, 9 minutes ago
Australia, 16 minutes ago
United States, 38 minutes ago
Hong Kong, 38 minutes ago
Recent Awards •
All
Popular Question to
Muhammad
•
0
Popular Question to
synat.keam
▴
100
Popular Question to
syedahamdani94
•
0
Popular Question to
mohammadhassanj
▴
260
Popular Question to
finswimmer
16k
Recent Replies
Answer: Checking chromosome builds for genotyping data
by
Muhammad
•
0
Assume you have genotype data in Plink format. (G.bed, G.bim, G.fam)
Download some reference panel data in Plink format (R.bed, R.bim, R.f…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors)
by
nguyenn6
•
0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed
by
anton.i.petrov
•
0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp
by
analyst
▴
50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★
1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★
7.2k
See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴
130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴
10
Thank you so much for your response . Really appreciate it.
I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
•
0
i have the same error, i used high performance computer, here is my code to set memory.
srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴
10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
•
0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Traffic: 1049 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6