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Comment: Comment: quality control scRNAseq
8 weeks ago by jv ★ 1.8k
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346
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Answer: Answer: quality control scRNAseq
8 weeks ago by jv ★ 1.8k
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Comment: Comment: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
8 weeks ago by jv ★ 1.8k
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394
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Comment: Comment: Re. Batch effect correction in data with a design matrix without full rank
9 weeks ago by jv ★ 1.8k
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Job: Data scientist/Bioinformatician University of Wisconsin Biotechnology Center Bioinformatics Resource Center
data-scientist
updated 8 weeks ago by 43k • written 9 weeks ago by ★ 1.8k
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418
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Comment: Comment: Can I perform a Functional Enrichment Analysis on a specific list of pre-defined
9 weeks ago by jv ★ 1.8k
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299
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Comment: Comment: WGCNA for co-expression network analysis
9 weeks ago by jv ★ 1.8k
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680
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
9 weeks ago by jv ★ 1.8k
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401
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
9 weeks ago by jv ★ 1.8k
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326
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Answer: Answer: Single cell rna sequencing analysis using R help
9 weeks ago by jv ★ 1.8k
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326
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Comment: Comment: Single cell rna sequencing analysis using R help
9 weeks ago by jv ★ 1.8k
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401
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
9 weeks ago by jv ★ 1.8k
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1
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401
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
9 weeks ago by jv ★ 1.8k
0
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1
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680
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
9 weeks ago by jv ★ 1.8k
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0
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726
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Answer: Answer: Filter out doublet and Clustering
9 weeks ago by jv ★ 1.8k
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373
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Comment: Comment: Choosing right GSEA background gene sets
10 weeks ago by jv ★ 1.8k
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328
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Comment: Comment: Deseq2 shows differential expression while TPM values are not significantly diff
10 weeks ago by jv ★ 1.8k
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293
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Comment: Comment: Orthomcl Pairs
11 weeks ago by jv ★ 1.8k
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341
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Comment: Comment: WGCNA from Salmon Output
11 weeks ago by jv ★ 1.8k
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341
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Comment: Comment: WGCNA from Salmon Output
11 weeks ago by jv ★ 1.8k
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1
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375
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Comment: Comment: Limma - normalizing gene expression data from multiple SRA experiments
11 weeks ago by jv ★ 1.8k
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375
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Comment: Comment: Limma - normalizing gene expression data from multiple SRA experiments
11 weeks ago by jv ★ 1.8k
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467
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Comment: Comment: How do I get utr transcript coordinates?
11 weeks ago by jv ★ 1.8k
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332
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Comment: Comment: Getting less DE genes when incorporating all samples
12 weeks ago by jv ★ 1.8k
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575
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Comment: Comment: GO and KEGG
12 weeks ago by jv ★ 1.8k
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590
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Comment: Comment: Why am I receiving an error with RUVg in RUVseq
12 weeks ago by jv ★ 1.8k
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581
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Comment: Comment: Illumina NextSeq 500 Read Length
12 weeks ago by jv ★ 1.8k
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404
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
12 weeks ago by jv ★ 1.8k
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404
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
12 weeks ago by jv ★ 1.8k
1
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0
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467
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Answer: Answer: Significance of P value in GSEA
12 weeks ago by jv ★ 1.8k
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497
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Answer: Answer: How to get raw mRNA count from Seurat converted anndata
12 weeks ago by jv ★ 1.8k
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0
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575
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Comment: Comment: GO and KEGG
12 weeks ago by jv ★ 1.8k
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1
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575
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Comment: Comment: GO and KEGG
12 weeks ago by jv ★ 1.8k
2
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1
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581
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Comment: Comment: Illumina NextSeq 500 Read Length
3 months ago by jv ★ 1.8k
1
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0
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276
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Comment: Comment: Retrieving gene expression from tabula muris in R
3 months ago by jv ★ 1.8k
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0
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592
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by jv ★ 1.8k
1
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2
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592
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by jv ★ 1.8k
1
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0
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429
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Answer: Answer: Need a spatial transcriptomics cancer data
3 months ago by jv ★ 1.8k
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0
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339
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Answer: Answer: GTEx TPMs Vs normalized data
3 months ago by jv ★ 1.8k
2
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1
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575
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Answer: Answer: GO and KEGG
3 months ago by jv ★ 1.8k
0
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1
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339
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Comment: Comment: GTEx TPMs Vs normalized data
3 months ago by jv ★ 1.8k
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212
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Answer: Answer: GEO database
3 months ago by jv ★ 1.8k
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0
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186
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scRNA-seq atlas differential pathway activation
scRNA-seq
3 months ago by jv ★ 1.8k
2
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0
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399
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Answer: Answer: Get the gene functions specific for clusters (RNA seq)
3 months ago by jv ★ 1.8k
2
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1
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514
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Comment: Comment: Annotation of Complex Heatmap
3 months ago by jv ★ 1.8k
2
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0
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514
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Comment: Comment: Annotation of Complex Heatmap
3 months ago by jv ★ 1.8k
2
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2
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514
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Comment: Comment: Annotation of Complex Heatmap
3 months ago by jv ★ 1.8k
1
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1
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337
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Comment: Comment: Gene Ontonology analysis of DEGs from rice genome
3 months ago by jv ★ 1.8k
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1
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398
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Comment: Comment: Values EXCEEDS the original data range after batch effect correction.
updated 3 months ago by 43k • written 3 months ago by ★ 1.8k
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1.1k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
3 months ago by jv ★ 1.8k
382 results • Page 1 of 8
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