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Comment: Comment: STACKS PCR duplicate removal
6 weeks ago by maxrwjones ▴ 60
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274
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STACKS PCR duplicate removal
PCR VCF STACKS RAD-seq
6 weeks ago by maxrwjones ▴ 60
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0
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466
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Comment: Comment: Including reference genome in SNP-based phylogeny
8 weeks ago by maxrwjones ▴ 60
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466
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Comment: Comment: Including reference genome in SNP-based phylogeny
8 weeks ago by maxrwjones ▴ 60
0
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1
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466
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Comment: Comment: Including reference genome in SNP-based phylogeny
8 weeks ago by maxrwjones ▴ 60
5
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5
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466
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Including reference genome in SNP-based phylogeny
phylogeny VCF WGS
8 weeks ago by maxrwjones ▴ 60
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332
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Comment: Comment: Phylogeny from mixed GBS and WGS
12 weeks ago by maxrwjones ▴ 60
1
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2
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332
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Phylogeny from mixed GBS and WGS
VCF Phylogeny GBS WGS tree
12 weeks ago by maxrwjones ▴ 60
12
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22
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5.0k
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Trimmomatic failing to cut known adapter
trimmomatic
updated 18 months ago by 100k • written 2.5 years ago by ▴ 60
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5.0k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.5 years ago by maxrwjones ▴ 60
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0
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5.0k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.5 years ago by maxrwjones ▴ 60
1
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2
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5.0k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.5 years ago by maxrwjones ▴ 60
0
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0
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5.0k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.5 years ago by maxrwjones ▴ 60
0
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1
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5.0k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.5 years ago by maxrwjones ▴ 60
0
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1
reply
5.0k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.5 years ago by maxrwjones ▴ 60
0
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3
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5.0k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.5 years ago by maxrwjones ▴ 60
0
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1
reply
5.0k
views
Comment: Comment: Trimmomatic failing to cut known adapter
2.5 years ago by maxrwjones ▴ 60
0
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0
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5.0k
views
Comment: Comment: Trimmomatic failing to cut known adapter
updated 2.5 years ago by 142k • written 2.5 years ago by ▴ 60
0
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1
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5.0k
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Comment: Comment: Trimmomatic failing to cut known adapter
2.5 years ago by maxrwjones ▴ 60
0
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2
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5.0k
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Comment: Comment: Trimmomatic failing to cut known adapter
updated 2.5 years ago by 142k • written 2.5 years ago by ▴ 60
0
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0
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853
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Comment: Comment: Confused by MACS2 --scale-to option
2.6 years ago by maxrwjones ▴ 60
2
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2
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853
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Confused by MACS2 --scale-to option
macs2 macs ChIP ATAC
2.6 years ago by maxrwjones ▴ 60
0
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0
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433
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bedtools genomecov fractions not summing to 1
genomecov bedtools
3.0 years ago by maxrwjones ▴ 60
1
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0
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1.9k
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Comment: Comment: Bedtools intersect PE BAM reads
3.0 years ago by maxrwjones ▴ 60
3
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2
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1.9k
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Bedtools intersect PE BAM reads
intersect BAM bedtools
3.0 years ago by maxrwjones ▴ 60
0
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0
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1.2k
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Comment: Comment: Bedtools intersect 0- and 1-based coordinate files
3.0 years ago by maxrwjones ▴ 60
2
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2
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1.2k
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Bedtools intersect 0- and 1-based coordinate files
gff intersect bedtools bam
3.0 years ago by maxrwjones ▴ 60
0
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0
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2.7k
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Comment: Comment: BAI index format
3.0 years ago by maxrwjones ▴ 60
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0
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2.7k
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Comment: Comment: BAI index format
3.0 years ago by maxrwjones ▴ 60
1
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1
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2.7k
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Comment: Comment: BAI index format
3.0 years ago by maxrwjones ▴ 60
0
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1
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2.7k
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Comment: Comment: BAI index format
3.1 years ago by maxrwjones ▴ 60
0
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1
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2.7k
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Comment: Comment: BAI index format
3.1 years ago by maxrwjones ▴ 60
0
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1
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2.7k
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Comment: Comment: BAI index format
3.1 years ago by maxrwjones ▴ 60
6
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12
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2.7k
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BAI index format
BAI index BAM CSI
3.0 years ago by maxrwjones ▴ 60
0
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0
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1.0k
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Comment: Comment: Samtools view filter by reference sequence
3.1 years ago by maxrwjones ▴ 60
2
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2
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1.0k
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Samtools view filter by reference sequence
samtools
3.1 years ago by maxrwjones ▴ 60
0
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0
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2.2k
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Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
3.1 years ago by maxrwjones ▴ 60
0
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1
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2.2k
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Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
3.1 years ago by maxrwjones ▴ 60
4
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7
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2.2k
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How are BWA/bowtie/etc indices built for multiple fasta entries?
index fasta mapping BWA bowtie
3.1 years ago by maxrwjones ▴ 60
0
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0
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2.2k
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Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
3.1 years ago by maxrwjones ▴ 60
0
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0
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2.2k
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Comment: Comment: How are BWA/bowtie/etc indices built for multiple fasta entries?
3.1 years ago by maxrwjones ▴ 60
0
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0
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1.5k
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Comment: Comment: ATAC-seq - remove mt reads using KMC
3.1 years ago by maxrwjones ▴ 60
0
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1
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1.5k
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Comment: Comment: ATAC-seq - remove mt reads using KMC
3.1 years ago by maxrwjones ▴ 60
2
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4
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1.5k
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ATAC-seq - remove mt reads using KMC
samtools chrM ATAC-seq mitochondria KMC
3.1 years ago by maxrwjones ▴ 60
0
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0
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938
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Comment: Comment: How can a duplicate read be interchromosomal?
3.2 years ago by maxrwjones ▴ 60
0
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0
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2.0k
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Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
3.2 years ago by maxrwjones ▴ 60
0
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2
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938
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How can a duplicate read be interchromosomal?
interchromosomal duplicate NGS samtools picard
3.2 years ago by maxrwjones ▴ 60
0
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0
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2.0k
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Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
3.2 years ago by maxrwjones ▴ 60
0
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2
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2.0k
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Comment: Comment: Bowtie2 & Hisat2 SAM flags above 256?
3.2 years ago by maxrwjones ▴ 60
4
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5
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2.0k
views
Bowtie2 & Hisat2 SAM flags above 256?
manual SAM read-mapping flags bowtie2
3.2 years ago by maxrwjones ▴ 60
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