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How to filter the BAM file using barcode list produced by 10x pipelines?
list barcode
updated 12 months ago by 142k • written 16 months ago by ▴ 30
1
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0
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563
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Comment: Comment: How to make cut off linein cluster,
13 months ago by Info.shi ▴ 30
3
votes
2
replies
563
views
How to make cut off linein cluster,
dendogram Cutoff R
updated 13 months ago by 142k • written 13 months ago by ▴ 30
0
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1
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1.4k
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Comment: Comment: How to label by colour in PCA plot?
16 months ago by Info.shi ▴ 30
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1
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1.4k
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Comment: Comment: How to label by colour in PCA plot?
16 months ago by Info.shi ▴ 30
0
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5
replies
1.4k
views
How to label by colour in PCA plot?
label PCA plot. colure
updated 16 months ago by 11k • written 16 months ago by ▴ 30
0
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1
reply
525
views
Why barcode list doesn't filter exactly according to the same as list?
bam barcode
16 months ago by Info.shi ▴ 30
0
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1
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1.6k
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Comment: Comment: how to get fastq file from cellranger?
17 months ago by Info.shi ▴ 30
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1
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1.6k
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Comment: Comment: how to get fastq file from cellranger?
17 months ago by Info.shi ▴ 30
0
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1
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1.6k
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Comment: Comment: how to get fastq file from cellranger?
17 months ago by Info.shi ▴ 30
0
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1
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1.6k
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Comment: Comment: how to get fastq file from cellranger?
17 months ago by Info.shi ▴ 30
0
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9
replies
1.6k
views
how to get fastq file from cellranger?
Cellranger mkfastq
updated 17 months ago by 142k • written 17 months ago by ▴ 30
3
votes
3
replies
2.0k
views
Can we use UMAP clustering on bulk data?
R UMAP
updated 19 months ago by 43k • written 19 months ago by ▴ 30
1
vote
2
replies
927
views
How to change gene coordinate in gtf file?
perl python R
updated 2.2 years ago by 100k • written 2.2 years ago by ▴ 30
0
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0
replies
631
views
How to call variant by --max-depth for RNAseq
bcftools Samtools
updated 11 months ago by 43k • written 2.4 years ago by ▴ 30
1
vote
1
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814
views
How to call variant minimum 3 read coverage to make consensus?
bcftools mpileup
updated 2.6 years ago by 100k • written 2.6 years ago by ▴ 30
0
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0
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.6 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.6 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.6 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.6 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.6 years ago by Info.shi ▴ 30
0
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0
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.6 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.6 years ago by Info.shi ▴ 30
5
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13
replies
2.9k
views
What will the the classic approach is to make pairwise comparisons between the groups in edgeR?
edgeR
2.6 years ago by Info.shi ▴ 30
0
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1
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1.2k
views
Comment: Comment: How to remove Illumina TruSeq Index adapters reverse (R2 reads )
2.7 years ago by Info.shi ▴ 30
2
votes
3
replies
1.2k
views
How to remove Illumina TruSeq Index adapters reverse (R2 reads )
Illumina adapter sequence TruSeq
updated 2.7 years ago by 142k • written 2.7 years ago by ▴ 30
3
votes
2
replies
1.7k
views
How to convert (Newick) tree topology without branch length!
sed awk perl
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 30
0
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0
replies
473
views
How to Write same Gene name in column with strain identifier!
awk NJ perl Phylogeny
updated 3.1 years ago by 3.9k • written 3.1 years ago by ▴ 30
6
votes
5
replies
1.1k
views
How to create matrix from row data
sed perl R awk
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 30
0
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1
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1.1k
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Comment: Comment: how to create matrix from row data.
3.1 years ago by Info.shi ▴ 30
5
votes
5
replies
2.7k
views
How to remove all-N sequence entries from fasta file.
awk perl
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 30
2
votes
1
reply
2.4k
views
How to make consensus sequence from aligned reads ?
sequence Transcriptome aligned consensus reads
3.1 years ago by Info.shi ▴ 30
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