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Comment: Comment: Differential Gene Expression
2.7 years ago by Pratik ★ 1.0k
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4.4k
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Comment: Comment: Differential Gene Expression
2.7 years ago by Pratik ★ 1.0k
1
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1
reply
4.4k
views
Comment: Comment: Differential Gene Expression
2.7 years ago by Pratik ★ 1.0k
5
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3
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1.3k
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Is removing strand information when obtaining intergenic regions from GRanges necessary?
GenomicRanges methylation strand intergenic genic
updated 2.7 years ago by 8.7k • written 2.7 years ago by ★ 1.0k
4
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1
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4.4k
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Answer: Answer: Differential Gene Expression
2.7 years ago by Pratik ★ 1.0k
0
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0
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43k
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Comment: Comment: Get chromosome sizes from fasta file
2.7 years ago by Pratik ★ 1.0k
2
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1
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948
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Answer: Answer: Internship in research
2.8 years ago by Pratik ★ 1.0k
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1
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3.0k
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Answer: Answer: FindMarkers for ClusterProfiler
2.8 years ago by Pratik ★ 1.0k
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1
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3.0k
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Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
2.8 years ago by Pratik ★ 1.0k
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1
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1.3k
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Comment: Comment: How to plot/combine biological replicates on a genomic features plot for methyla
2.8 years ago by Pratik ★ 1.0k
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0
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1.2k
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Comment: Comment: What cut-offs to use for Genomic Features Pie Chart for Methylation Array Data?
2.8 years ago by Pratik ★ 1.0k
2
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3
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1.3k
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How to plot/combine biological replicates on a genomic features plot for methylated array?
array methylation beadchip plot features genomic
updated 2.8 years ago by ★ 2.9k • written 2.8 years ago by ★ 1.0k
3
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2
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1.2k
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What cut-offs to use for Genomic Features Pie Chart for Methylation Array Data?
beadchip array methylation
2.8 years ago by Pratik ★ 1.0k
0
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0
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37k
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Comment: Comment: How to embed known cell information into Seurat object? AddMetaData?
2.8 years ago by Pratik ★ 1.0k
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0
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1.2k
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Answer: Answer: ChEMBL ID to Ensembl ID
2.8 years ago by Pratik ★ 1.0k
0
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1
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4.2k
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Comment: Comment: Free to use bioinformatics servers & large memory
2.9 years ago by Pratik ★ 1.0k
1
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1
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4.2k
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Comment: Comment: Free to use bioinformatics servers & large memory
2.9 years ago by Pratik ★ 1.0k
0
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1
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4.2k
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Comment: Comment: Free to use bioinformatics servers & large memory
2.9 years ago by Pratik ★ 1.0k
0
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1
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1.0k
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Comment: Comment: How to create gene level data from a probe level data?
2.9 years ago by Pratik ★ 1.0k
0
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1
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1.2k
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Comment: Comment: How to normalize and transform RNA-seq data of different samples for PCA?
2.9 years ago by Pratik ★ 1.0k
7
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3
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1.2k
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How to normalize and transform RNA-seq data of different samples for PCA?
TMM PCA RNA-seq edgeR
updated 2.9 years ago by 88k • written 2.9 years ago by ★ 1.0k
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0
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1.5k
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Answer: Answer: Is there a way to do GO terms enrichment analysis and keep track of gene symbols
2.9 years ago by Pratik ★ 1.0k
1
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0
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2.1k
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Comment: Comment: extracting ensembl gene id or entrez gene id from a gene annotation file for BIN
2.9 years ago by Pratik ★ 1.0k
0
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1
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2.1k
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Comment: Comment: extracting ensembl gene id or entrez gene id from a gene annotation file for BIN
2.9 years ago by Pratik ★ 1.0k
1
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1
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1.6k
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What format should a dataframe be in to use the AddMetaData function in Seurat?
seurat R RNA-Seq rna-seq scRNA-seq
2.9 years ago by Pratik ★ 1.0k
1
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0
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1.6k
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Answer: Answer: What format should a dataframe be in to use the AddMetaData function in Seurat?
2.9 years ago by Pratik ★ 1.0k
9
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5
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12k
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How to read a dataframe into Seurat for AddMetaData properly?
seurat rna-seq RNA-Seq R
2.9 years ago by Pratik ★ 1.0k
6
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0
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12k
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Answer: Answer: How to read a dataframe into Seurat for AddMetaData properly?
2.9 years ago by Pratik ★ 1.0k
1
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1
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5.8k
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Comment: Comment: How to create a signature matrix based on a given single cell RNA-seq data
2.9 years ago by Pratik ★ 1.0k
0
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0
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14k
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Comment: Comment: How do you generate TMM normalized counts using EdgeR?
2.9 years ago by Pratik ★ 1.0k
0
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0
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14k
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Comment: Comment: How do you generate TMM normalized counts using EdgeR?
2.9 years ago by Pratik ★ 1.0k
0
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0
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1.3k
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Comment: Comment: How to convert a STK alignment into CLUSTAL?
2.9 years ago by Pratik ★ 1.0k
39
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5
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14k
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How do you generate TMM normalized counts using EdgeR?
R RNA-seq edgeR
updated 5 weeks ago by ▴ 60 • written 2.9 years ago by ★ 1.0k
0
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1
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1.3k
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Comment: Comment: How to convert a STK alignment into CLUSTAL?
2.9 years ago by Pratik ★ 1.0k
0
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0
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1.0k
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Comment: Comment: bgr files: change chromosome annotation
2.9 years ago by Pratik ★ 1.0k
2
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0
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3.7k
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Answer: Answer: GTF file how do I search for duplicates of Gene ID and print them out
2.9 years ago by Pratik ★ 1.0k
1
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1
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2.0k
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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
2
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1
reply
13k
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Comment: Comment: Is there a way to download FASTq files from SRR IDs?
2.9 years ago by Pratik ★ 1.0k
0
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0
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2.0k
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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
0
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0
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2.0k
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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
0
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2
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2.0k
views
Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
0
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1
reply
2.0k
views
Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
2.9 years ago by Pratik ★ 1.0k
9
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13
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2.0k
views
mapped reads (m aligned) is higher for a subset sample?
salmon fastqc multiqc RNA-seq
updated 2.9 years ago by 88k • written 2.9 years ago by ★ 1.0k
0
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0
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1.2k
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Comment: Comment: Up to date bulk RNA-seq Quality Control tools?
2.9 years ago by Pratik ★ 1.0k
0
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0
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1.2k
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Comment: Comment: Up to date bulk RNA-seq Quality Control tools?
2.9 years ago by Pratik ★ 1.0k
6
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4
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1.2k
views
Up to date bulk RNA-seq Quality Control tools?
QC RNA-seq
2.9 years ago by Pratik ★ 1.0k
1
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0
replies
716
views
Comment: Comment: Single cell clusters annotating to same cell-type
2.9 years ago by Pratik ★ 1.0k
1
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0
replies
948
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Comment: Comment: How can I compare the similarities of two transcriptomes?
2.9 years ago by Pratik ★ 1.0k
0
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0
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828
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Comment: Comment: Cannot great a gene by gene matrix in Rstudio
2.9 years ago by Pratik ★ 1.0k
1
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1
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828
views
Answer: Answer: Cannot great a gene by gene matrix in Rstudio
2.9 years ago by Pratik ★ 1.0k
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