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Comment: Comment: Bowtie2 Alignment with low percentage of properly paired reads (ATAC-seq)
19 months ago by Marco Pannone ▴ 790
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1.2k
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Comment: Comment: Exon counts do not match gene and transcript counts
19 months ago by Marco Pannone ▴ 790
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1.3k
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Comment: Comment: How to perform paired t-test in R for obtaining p-value of each gene?
19 months ago by Marco Pannone ▴ 790
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2
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1.1k
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Comment: Comment: ChIPQC error <<Unable to process. Each bam file must be associated with at most
19 months ago by Marco Pannone ▴ 790
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1
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1.1k
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Comment: Comment: ChIPQC error <<Unable to process. Each bam file must be associated with at most
19 months ago by Marco Pannone ▴ 790
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0
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729
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Comment: Comment: Bowtie 2 error- bowtie2-align died with signal 6 (ABRT): Help please!
19 months ago by Marco Pannone ▴ 790
1
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0
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673
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Comment: Comment: quality control chip-seq
19 months ago by Marco Pannone ▴ 790
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685
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Comment: Comment: To order list of genes
19 months ago by Marco Pannone ▴ 790
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2.1k
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Comment: Comment: Pathway Score measurement in R
19 months ago by Marco Pannone ▴ 790
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587
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Comment: Comment: DESeq2. Multi-factor Interactions designs
19 months ago by Marco Pannone ▴ 790
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1.4k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by Marco Pannone ▴ 790
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2
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1.4k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by Marco Pannone ▴ 790
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1
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1.4k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by Marco Pannone ▴ 790
1
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1
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1.4k
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Answer: Answer: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by Marco Pannone ▴ 790
1
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2
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741
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Answer: Answer: How to add line breaks before each ">" header line in fasta file
19 months ago by Marco Pannone ▴ 790
0
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0
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863
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Comment: Comment: Change of -t argument in featureCounts affecting annotation
19 months ago by Marco Pannone ▴ 790
0
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1
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863
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Comment: Comment: Change of -t argument in featureCounts affecting annotation
19 months ago by Marco Pannone ▴ 790
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4
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863
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Change of -t argument in featureCounts affecting annotation
rnaseq subread annotation featureCounts
19 months ago by Marco Pannone ▴ 790
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0
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770
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Comment: Comment: Deeptools comparing heatmap zMin and zMax across different plotHeatmaps
19 months ago by Marco Pannone ▴ 790
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1
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770
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Comment: Comment: Deeptools comparing heatmap zMin and zMax across different plotHeatmaps
19 months ago by Marco Pannone ▴ 790
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0
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4.6k
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Comment: Comment: Unable to install bioconda and bowtie
19 months ago by Marco Pannone ▴ 790
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0
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1.7k
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Comment: Comment: How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
20 months ago by Marco Pannone ▴ 790
0
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1
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4.6k
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Comment: Comment: Unable to install bioconda and bowtie
20 months ago by Marco Pannone ▴ 790
0
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1
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4.6k
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Comment: Comment: Unable to install bioconda and bowtie
20 months ago by Marco Pannone ▴ 790
0
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0
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649
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Comment: Comment: calling peaks in ChIP-seq datasets from bedgraph files
20 months ago by Marco Pannone ▴ 790
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0
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737
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Comment: Comment: macs callpeak q value cutoff 1 and 0.05 with different peak result
20 months ago by Marco Pannone ▴ 790
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1
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816
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Comment: Comment: trimmomatic
20 months ago by Marco Pannone ▴ 790
1
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1
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897
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Answer: Answer: How can I filter genes >10 reads in at least 2 replicates
22 months ago by Marco Pannone ▴ 790
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0
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661
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Comment: Comment: Genome indexing
22 months ago by Marco Pannone ▴ 790
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1
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661
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Comment: Comment: Genome indexing
22 months ago by Marco Pannone ▴ 790
5
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1
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765
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Answer: Answer: How to extract the read counts after normalization with DESeq in R?
22 months ago by Marco Pannone ▴ 790
2
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0
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453
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Answer: Answer: Rare chromosomes list in VCF file
22 months ago by Marco Pannone ▴ 790
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0
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1.1k
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Comment: Comment: PlotHeatmap in deeptools horizontally
22 months ago by Marco Pannone ▴ 790
0
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1
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1.1k
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Comment: Comment: PlotHeatmap in deeptools horizontally
22 months ago by Marco Pannone ▴ 790
1
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1
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1.1k
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Comment: Comment: Increased GC content after trimming RNAseq data
22 months ago by Marco Pannone ▴ 790
2
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1
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1.1k
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Comment: Comment: PlotHeatmap in deeptools horizontally
22 months ago by Marco Pannone ▴ 790
1
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1
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2.0k
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Answer: Answer: gene set enrichment analysis
22 months ago by Marco Pannone ▴ 790
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0
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3.5k
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Comment: Comment: Cut&Run vs ChIP-seq pipeline
22 months ago by Marco Pannone ▴ 790
0
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1
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3.5k
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Comment: Comment: Cut&Run vs ChIP-seq pipeline
22 months ago by Marco Pannone ▴ 790
4
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5
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3.5k
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Cut&Run vs ChIP-seq pipeline
chip-seq cut-run
updated 22 months ago by 13k • written 22 months ago by ▴ 790
2
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1
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796
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Comment: Comment: Error in DiffBind
22 months ago by Marco Pannone ▴ 790
1
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0
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1.5k
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Comment: Comment: How to do GO enrichment analysis for Klebsiella pneumonia?
22 months ago by Marco Pannone ▴ 790
2
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1
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765
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Answer: Answer: DESeq2: Multiple disease condition vs Normal
23 months ago by Marco Pannone ▴ 790
0
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0
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335
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Explore transcription data of pseudogenes
pseudogenes transcriptome databases RNA-seq
23 months ago by Marco Pannone ▴ 790
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1
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1.1k
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Comment: Comment: Possible rRNA contamination in one sample
23 months ago by Marco Pannone ▴ 790
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1
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1.1k
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Comment: Comment: Possible rRNA contamination in one sample
23 months ago by Marco Pannone ▴ 790
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1
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1.1k
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Comment: Comment: Possible rRNA contamination in one sample
23 months ago by Marco Pannone ▴ 790
1
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1
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1.1k
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Comment: Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
24 months ago by Marco Pannone ▴ 790
0
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1
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1.1k
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Comment: Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
24 months ago by Marco Pannone ▴ 790
0
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0
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716
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Comment: Comment: BED file from GSEA gene set
24 months ago by Marco Pannone ▴ 790
194 results • Page 2 of 4
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