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biohack92
biohack92
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13.8 years ago
Last seen:
9.5 years ago
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United States

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Latest posts by user
1 vote
1 reply
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Comment: C: Found a raw data file; which -omics technology is this output from?
written by biohack92 biohack92
0 votes
5 replies
2.1K views
Found a raw data file; which -omics technology is this output from?
rna-seq rna-seq sequencing next-gen
written by biohack92 biohack92
1 vote
2 replies
2.5K views
Is there any reason to analyze plus/minus strands separately in bisulfite seq/methylation data?
bisulfite sequencing methylation
updated by Antonio R. Franco Antonio R. Franco • written by biohack92 biohack92
0 votes
0 replies
0 views
Comment: C: ggbio package only works with h19 genome
written by biohack92 biohack92
0 votes
1 reply
2.6K views
List of exon coordinates from a single Entrez gene ID. Are these exons for alternative splicings of the gene?
genomicranges r bioconductor
updated by jotan jotan • written by biohack92 biohack92
0 votes
0 replies
1 view
Comment: C: Is there any way to determine whether my sequenced data uses 0- or 1-based coord
written by biohack92 biohack92
0 votes
2 replies
2.3K views
Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
sequencing coordinates genome bed bedgraph
updated by Alex Reynolds Alex Reynolds • written by biohack92 biohack92
0 votes
1 reply
0 views
Comment: C: How do you remove coverage outliers in sequencing count data?
written by biohack92 biohack92
0 votes
4 replies
3.7K views
How do you remove coverage outliers in sequencing count data?
bisulfite sequencing qc r quality control
updated by dariober dariober • written by biohack92 biohack92
1 vote
1 reply
1.8K views
How to calculate correlations across two matrices across samples?
statistics r sequencing methylation
updated by Biostar Biostar • written by biohack92 biohack92
0 votes
2 replies
232 views
How to apply PCA or correlation test to count data?
r bisulfite sequencing bsseq
updated by dariober dariober • written by biohack92 biohack92
2 votes
1 reply
4.3K views
What's the difference between Bioconductor's knownGene and ensGene annotation packages?
r bioconductor annotation ensembl
updated by Emily Emily • written by biohack92 biohack92
1 vote
3 replies
306 views
How can you distinguish between whole genome and targeted bisulfite sequencing data?
sequencing bisulfite whole genome genome
updated by Matt Shirley Matt Shirley • written by biohack92 biohack92
0 votes
1 reply
125 views
Multiple files for each sample in bisulfite sequencing dataset
methylation sequencing bisulfite bedgraph bed
updated by Antonio R. Franco Antonio R. Franco • written by biohack92 biohack92
0 votes
1 reply
184 views
How to find differentially methylated regions from bigwig/wig/bedgraph files?
bigwig genome wig bedgraph
updated by jotan jotan • written by biohack92 biohack92
0 votes
0 replies
0 views
Comment: C: Running Eigenstrat?
written by biohack92 biohack92
0 votes
0 replies
0 views
Comment: C: Running Eigenstrat?
written by biohack92 biohack92
0 votes
0 replies
0 views
Comment: Comment: How to maintain same color key across multiple heatmaps despite different datase
updated by Ram Ram • written by biohack92 biohack92
0 votes
2 replies
4.7K views
How to maintain same color key across multiple heatmaps despite different datasets using heatmap.3
r heatmap
updated by Ram Ram • written by biohack92 biohack92
0 votes
1 reply
0 views
Comment: C: Is this a .bed file? If so, why is it not importing into IGV properly?
written by biohack92 biohack92
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