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Answer: Answer: Using samtools with GCS (google cloud storage) on a docker container seems to gi
3 days ago by aw7 ▴ 300
3
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213
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Answer: Answer: Long reads and fixing of mate-pair issues/marking duplicates with samtools
3 days ago by aw7 ▴ 300
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586
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Answer: Answer: Help interpreting Samtools Flagstat results
3 months ago by aw7 ▴ 300
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774
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Answer: Answer: samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in
4 months ago by aw7 ▴ 300
2
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437
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Answer: Answer: Issue softclipping reads when they belong and don't belong to a common amplicon
5 months ago by aw7 ▴ 300
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647
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Comment: Comment: Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coor
6 months ago by aw7 ▴ 300
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503
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Answer: Answer: Filtering for primary and secondary reads using sam flags (0 properly paired rea
6 months ago by aw7 ▴ 300
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975
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Comment: Comment: How is the format of the bed file for samtools ampliconclip
8 months ago by aw7 ▴ 300
4
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668
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Answer: Answer: samtools ampliconclip option --strand is not working?
8 months ago by aw7 ▴ 300
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380
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Comment: Comment: How to get MD tag sequence of a read from a sam file given a bed file?
8 months ago by aw7 ▴ 300
3
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1.2k
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Answer: Answer: What are bitsets in Samtools flagstat output?
9 months ago by aw7 ▴ 300
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1.2k
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Comment: Comment: Edit and re-head BAM file
12 months ago by aw7 ▴ 300
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1.1k
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Comment: Comment: Sort BAM file by read mates
18 months ago by aw7 ▴ 300
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1
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1.1k
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Comment: Comment: Samtools flagstat
20 months ago by aw7 ▴ 300
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1.0k
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Comment: Comment: Samtools ampliconclip hard clip not giving same results as soft clip
20 months ago by aw7 ▴ 300
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1.7k
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Comment: Comment: How to properly pass from samtools rmdup to samtools markdup
21 months ago by aw7 ▴ 300
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911
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Comment: Comment: BAM reheader
2.0 years ago by aw7 ▴ 300
2
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1.3k
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Answer: Answer: What is the MAPQ value of flag 512 for bam file?
2.1 years ago by aw7 ▴ 300
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1.1k
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Comment: Comment: samtools markdup
2.2 years ago by aw7 ▴ 300
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1.1k
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Comment: Comment: samtools markdup
2.2 years ago by aw7 ▴ 300
2
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3.3k
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Comment: Comment: samtools sort not working when using multiple threads
2.3 years ago by aw7 ▴ 300
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0
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1.7k
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Comment: Comment: Samtools on arm / aws
2.3 years ago by aw7 ▴ 300
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1
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1.7k
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Answer: Answer: Samtools on arm / aws
2.3 years ago by aw7 ▴ 300
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3.3k
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Comment: Comment: samtools sort not working when using multiple threads
2.3 years ago by aw7 ▴ 300
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0
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1.6k
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Answer: Answer: Header error while converting sam file to bam
2.5 years ago by aw7 ▴ 300
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0
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1.3k
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Answer: Answer: Picard vs Samtools converting CRAM to FASTQ
2.5 years ago by aw7 ▴ 300
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1.5k
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Comment: Comment: bamdst gives error "EOF marker is absent. The input is probably truncated."
2.7 years ago by aw7 ▴ 300
3
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1.1k
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Answer: Answer: What does samtools mean by 'orientation' when marking duplicates?
2.7 years ago by aw7 ▴ 300
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0
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1.0k
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Answer: Answer: What does the -0 flag of samtools fastq mean?
3.1 years ago by aw7 ▴ 300
1
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0
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1.2k
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Answer: A: Doing nohup samtools sort and [ 1]+ Exit 1 is showing up
3.4 years ago by aw7 ▴ 300
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