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questions
0
votes
3
replies
1.8k
views
Generate VCF from different .bam files with different chromosome names
bcftools
mpileup
vcf
updated 4 months ago by
Ram
43k • written 4.2 years ago by
evoclive
• 0
0
votes
2
replies
563
views
Clarify interpretation of slash (/) and vertical pipe (|) in GATK's vcf output?
VCF
GATK
formatting
23 months ago by
evoclive
• 0
3
votes
5
replies
838
views
GATK based variant calling yields excessive Indels
indels
calling
GATK
variant
PICARD
updated 23 months ago by
Pierre Lindenbaum
161k • written 23 months ago by
evoclive
• 0
4
votes
14
replies
1.6k
views
Strange Trimmomatic behavior
Trimmomatic
updated 24 months ago by
lieven.sterck
15k • written 24 months ago by
evoclive
• 0
2
votes
2
replies
627
views
Gene annotation for Andrographis paniculata
paniculata
annotation
Andrographis
2.4 years ago by
evoclive
• 0
0
votes
0
replies
513
views
RADseq processing parameters vs. data quality
Stacks
RADseq
assembly
updated 3.3 years ago by
Biostar
20 • written 3.4 years ago by
evoclive
• 0
0
votes
2
replies
929
views
Primer3 not finding microsatellite primers from reference genome
Primer3
MISA
Microsatellites
SSR
3.9 years ago by
evoclive
• 0
0
votes
2
replies
1.5k
views
Generating input file for Primer3 using p3_in.pl (MISA)
Primer3 MISA SSR
3.9 years ago by
evoclive
• 0
0
votes
1
reply
1.6k
views
Hardy Weinberg Equilibrium in GWAS
SNP
genome
GWAS
Hardy-Weinberg
updated 4.4 years ago by
Kevin Blighe
88k • written 4.4 years ago by
evoclive
• 0
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