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Answer: Answer: vg call is time consuming
7 weeks ago by glenn.hickey ▴ 520
0
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1
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1.2k
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Answer: Answer: need interpretations for the vg call output
6 months ago by glenn.hickey ▴ 520
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0
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764
views
Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
6 months ago by glenn.hickey ▴ 520
1
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0
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403
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Answer: Answer: Issues while installing VG
6 months ago by glenn.hickey ▴ 520
0
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0
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794
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Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
6 months ago by glenn.hickey ▴ 520
2
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1
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535
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Answer: Answer: vg call coverage/suppport
6 months ago by glenn.hickey ▴ 520
0
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1
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794
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Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
7 months ago by glenn.hickey ▴ 520
1
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0
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462
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Answer: Answer: How to change the output reference for vg giraffe BAM output
8 months ago by glenn.hickey ▴ 520
2
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0
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541
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Comment: Comment: Can vg stats -a be used on a bam file?
8 months ago by glenn.hickey ▴ 520
2
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3
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1.3k
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Answer: Answer: How to identify which genome the variations in the pan-genome graph originate fr
9 months ago by glenn.hickey ▴ 520
1
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1
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1.5k
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Comment: Comment: Speed up vg call ?
9 months ago by glenn.hickey ▴ 520
1
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1
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1.5k
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Comment: Comment: Speed up vg call ?
9 months ago by glenn.hickey ▴ 520
2
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0
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474
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Answer: Answer: Has anyone tried a combination of vg and cactus
9 months ago by glenn.hickey ▴ 520
2
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1
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1.1k
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Answer: Answer: population-level stratagy of vg call
9 months ago by glenn.hickey ▴ 520
1
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0
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1.0k
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Comment: Comment: vg map time consuming
9 months ago by glenn.hickey ▴ 520
0
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0
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964
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Answer: Answer: unable to find most of SVs in constructed graph.vg
10 months ago by glenn.hickey ▴ 520
0
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1
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964
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Answer: Answer: unable to find most of SVs in constructed graph.vg
10 months ago by glenn.hickey ▴ 520
2
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1
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964
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Answer: Answer: unable to find most of SVs in constructed graph.vg
10 months ago by glenn.hickey ▴ 520
2
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0
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1.5k
views
Answer: Answer: Speed up vg call ?
14 months ago by glenn.hickey ▴ 520
1
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0
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643
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Answer: Answer: Using VG to extract path sequences/sub-sequences
14 months ago by glenn.hickey ▴ 520
1
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0
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664
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Answer: Answer: vg sort gam file by read name
14 months ago by glenn.hickey ▴ 520
2
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1
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2.5k
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Answer: Answer: vg augment/call - Excessively high memory usage for some chromosomes
14 months ago by glenn.hickey ▴ 520
1
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1
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2.3k
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Answer: Answer: Using VG to genotype a GAM using a graph constructed from GFA
2.6 years ago by glenn.hickey ▴ 520
0
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1
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945
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Answer: Answer: Vg Call, not detecting SV due to soft-clipping
3.1 years ago by glenn.hickey ▴ 520
1
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1
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1.2k
views
Answer: Answer: Identify coordinates from the VCF generated from Vg call
3.1 years ago by glenn.hickey ▴ 520
1
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0
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768
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Answer: Answer: cannot see variations on graph image
3.1 years ago by glenn.hickey ▴ 520
2
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0
replies
937
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Answer: A: Handling of Reverse Strand in GAM file
3.4 years ago by glenn.hickey ▴ 520
1
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0
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1.2k
views
Answer: A: empty vcf from vg call
3.4 years ago by glenn.hickey ▴ 520
1
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0
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965
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Answer: A: Issue on vg call order of paths
3.4 years ago by glenn.hickey ▴ 520
1
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0
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1.1k
views
Answer: A: vg call has very different variant number between xg and hg
3.4 years ago by glenn.hickey ▴ 520
1
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0
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1.2k
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Answer: A: Whole genome alignment graph building
3.6 years ago by glenn.hickey ▴ 520
1
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0
replies
1.2k
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Answer: A: Merge multiple vcfs vgtools
updated 3.7 years ago by 43k • written 3.7 years ago by ▴ 520
0
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0
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1.2k
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Answer: A: Merge multiple vcfs vgtools
3.8 years ago by glenn.hickey ▴ 520
0
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0
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3.1k
views
Comment: C: GAF format from vg
3.8 years ago by glenn.hickey ▴ 520
2
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1
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2.1k
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Answer: A: Vg call in a specific region
3.8 years ago by glenn.hickey ▴ 520
0
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0
replies
1.2k
views
Answer: A: vg deconstruct with path sizes
3.9 years ago by glenn.hickey ▴ 520
0
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0
replies
718
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Answer: A: How can i use several samples of resequencing data to get a visualize paths
3.9 years ago by glenn.hickey ▴ 520
2
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1
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1.6k
views
Answer: A: Converting gam to gaf
3.9 years ago by glenn.hickey ▴ 520
1
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0
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993
views
Answer: A: vg map with long assembled contigs
3.9 years ago by glenn.hickey ▴ 520
1
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0
replies
1.9k
views
Comment: A: passing a third-party GFA to vg tools
3.9 years ago by glenn.hickey ▴ 520
2
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1
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1.3k
views
Answer: A: Merging .gam files
3.9 years ago by glenn.hickey ▴ 520
0
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0
replies
855
views
Answer: A: vg sv calling
4.1 years ago by glenn.hickey ▴ 520
0
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0
replies
1.5k
views
Answer: A: vg docker image
4.1 years ago by glenn.hickey ▴ 520
0
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0
replies
858
views
Answer: A: How do I deal with duplicate reads when using vg to analyse WGS data?
4.2 years ago by glenn.hickey ▴ 520
1
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1
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1.7k
views
Answer: A: Segmentation fault (core dumped) during vg surject
4.3 years ago by glenn.hickey ▴ 520
1
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0
replies
757
views
Answer: A: Edit distance of an alignment
4.3 years ago by glenn.hickey ▴ 520
1
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0
replies
1.3k
views
Answer: A: Extracting specific regions(ex, chr1:100-200 of hg38) from whole genome .vg and
updated 4.4 years ago by 35k • written 4.4 years ago by ▴ 520
0
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1
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1.1k
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Answer: A: More haplotype threads than expected
4.4 years ago by glenn.hickey ▴ 520
2
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1
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1.0k
views
Answer: A: How to determine haplotypes from variation graphs
4.4 years ago by glenn.hickey ▴ 520
1
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0
replies
1.4k
views
Answer: A: VG view command hangs with no result (VG Toolkit)
4.4 years ago by glenn.hickey ▴ 520
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