Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
1
vote
1
reply
253
views
Answer:
Answer: vg call is time consuming
5 weeks ago by
glenn.hickey
▴ 520
0
votes
1
reply
1.1k
views
Answer:
Answer: need interpretations for the vg call output
5 months ago by
glenn.hickey
▴ 520
1
vote
0
replies
737
views
Answer:
Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
5 months ago by
glenn.hickey
▴ 520
1
vote
0
replies
388
views
Answer:
Answer: Issues while installing VG
6 months ago by
glenn.hickey
▴ 520
0
votes
0
replies
779
views
Answer:
Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
6 months ago by
glenn.hickey
▴ 520
2
votes
1
reply
520
views
Answer:
Answer: vg call coverage/suppport
6 months ago by
glenn.hickey
▴ 520
0
votes
1
reply
779
views
Answer:
Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
6 months ago by
glenn.hickey
▴ 520
1
vote
0
replies
450
views
Answer:
Answer: How to change the output reference for vg giraffe BAM output
7 months ago by
glenn.hickey
▴ 520
2
votes
0
replies
523
views
Comment:
Comment: Can vg stats -a be used on a bam file?
8 months ago by
glenn.hickey
▴ 520
2
votes
3
replies
1.3k
views
Answer:
Answer: How to identify which genome the variations in the pan-genome graph originate fr
8 months ago by
glenn.hickey
▴ 520
1
vote
1
reply
1.5k
views
Comment:
Comment: Speed up vg call ?
9 months ago by
glenn.hickey
▴ 520
1
vote
1
reply
1.5k
views
Comment:
Comment: Speed up vg call ?
9 months ago by
glenn.hickey
▴ 520
2
votes
0
replies
469
views
Answer:
Answer: Has anyone tried a combination of vg and cactus
9 months ago by
glenn.hickey
▴ 520
2
votes
1
reply
1.1k
views
Answer:
Answer: population-level stratagy of vg call
9 months ago by
glenn.hickey
▴ 520
1
vote
0
replies
989
views
Comment:
Comment: vg map time consuming
9 months ago by
glenn.hickey
▴ 520
0
votes
0
replies
954
views
Answer:
Answer: unable to find most of SVs in constructed graph.vg
10 months ago by
glenn.hickey
▴ 520
0
votes
1
reply
954
views
Answer:
Answer: unable to find most of SVs in constructed graph.vg
10 months ago by
glenn.hickey
▴ 520
2
votes
1
reply
954
views
Answer:
Answer: unable to find most of SVs in constructed graph.vg
10 months ago by
glenn.hickey
▴ 520
2
votes
0
replies
1.5k
views
Answer:
Answer: Speed up vg call ?
14 months ago by
glenn.hickey
▴ 520
1
vote
0
replies
632
views
Answer:
Answer: Using VG to extract path sequences/sub-sequences
14 months ago by
glenn.hickey
▴ 520
1
vote
0
replies
653
views
Answer:
Answer: vg sort gam file by read name
14 months ago by
glenn.hickey
▴ 520
2
votes
1
reply
2.5k
views
Answer:
Answer: vg augment/call - Excessively high memory usage for some chromosomes
14 months ago by
glenn.hickey
▴ 520
1
vote
1
reply
2.3k
views
Answer:
Answer: Using VG to genotype a GAM using a graph constructed from GFA
2.6 years ago by
glenn.hickey
▴ 520
0
votes
1
reply
931
views
Answer:
Answer: Vg Call, not detecting SV due to soft-clipping
3.0 years ago by
glenn.hickey
▴ 520
1
vote
1
reply
1.1k
views
Answer:
Answer: Identify coordinates from the VCF generated from Vg call
3.0 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
764
views
Answer:
Answer: cannot see variations on graph image
3.1 years ago by
glenn.hickey
▴ 520
2
votes
0
replies
931
views
Answer:
A: Handling of Reverse Strand in GAM file
3.3 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
1.2k
views
Answer:
A: empty vcf from vg call
3.3 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
954
views
Answer:
A: Issue on vg call order of paths
3.3 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
1.1k
views
Answer:
A: vg call has very different variant number between xg and hg
3.3 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
1.2k
views
Answer:
A: Whole genome alignment graph building
3.6 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
1.2k
views
Answer:
A: Merge multiple vcfs vgtools
updated 3.7 years ago by
Ram
43k • written 3.7 years ago by
glenn.hickey
▴ 520
0
votes
0
replies
1.2k
views
Answer:
A: Merge multiple vcfs vgtools
3.7 years ago by
glenn.hickey
▴ 520
0
votes
0
replies
3.1k
views
Comment:
C: GAF format from vg
3.7 years ago by
glenn.hickey
▴ 520
2
votes
1
reply
2.1k
views
Answer:
A: Vg call in a specific region
3.8 years ago by
glenn.hickey
▴ 520
0
votes
0
replies
1.1k
views
Answer:
A: vg deconstruct with path sizes
3.8 years ago by
glenn.hickey
▴ 520
0
votes
0
replies
711
views
Answer:
A: How can i use several samples of resequencing data to get a visualize paths
3.8 years ago by
glenn.hickey
▴ 520
2
votes
1
reply
1.5k
views
Answer:
A: Converting gam to gaf
3.9 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
987
views
Answer:
A: vg map with long assembled contigs
3.9 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
1.9k
views
Comment:
A: passing a third-party GFA to vg tools
3.9 years ago by
glenn.hickey
▴ 520
2
votes
1
reply
1.3k
views
Answer:
A: Merging .gam files
3.9 years ago by
glenn.hickey
▴ 520
0
votes
0
replies
849
views
Answer:
A: vg sv calling
4.1 years ago by
glenn.hickey
▴ 520
0
votes
0
replies
1.5k
views
Answer:
A: vg docker image
4.1 years ago by
glenn.hickey
▴ 520
0
votes
0
replies
853
views
Answer:
A: How do I deal with duplicate reads when using vg to analyse WGS data?
4.2 years ago by
glenn.hickey
▴ 520
1
vote
1
reply
1.7k
views
Answer:
A: Segmentation fault (core dumped) during vg surject
4.2 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
752
views
Answer:
A: Edit distance of an alignment
4.2 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
1.3k
views
Answer:
A: Extracting specific regions(ex, chr1:100-200 of hg38) from whole genome .vg and
updated 4.3 years ago by
h.mon
35k • written 4.3 years ago by
glenn.hickey
▴ 520
0
votes
1
reply
1.1k
views
Answer:
A: More haplotype threads than expected
4.3 years ago by
glenn.hickey
▴ 520
2
votes
1
reply
1.0k
views
Answer:
A: How to determine haplotypes from variation graphs
4.3 years ago by
glenn.hickey
▴ 520
1
vote
0
replies
1.4k
views
Answer:
A: VG view command hangs with no result (VG Toolkit)
4.3 years ago by
glenn.hickey
▴ 520
53 results • Page
1 of 2
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6