Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
0
replies
1.8k
views
Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
20 months ago by Dan ▴ 180
0
votes
0
replies
1.2k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
20 months ago by Dan ▴ 180
0
votes
1
reply
1.2k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
20 months ago by Dan ▴ 180
0
votes
2
replies
1.2k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
20 months ago by Dan ▴ 180
0
votes
0
replies
1.2k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
20 months ago by Dan ▴ 180
0
votes
1
reply
1.2k
views
Comment: Comment: Can I directly compare the peaks from pair-end 50 and pair-end 100 ATAC-seq?
20 months ago by Dan ▴ 180
3
votes
10
replies
1.2k
views
Can I directly compare the regions defined by peaks from pair-end 50 and pair-end 100 ATAC-seq?
ATAC-seq
updated 20 months ago by 82k • written 20 months ago by ▴ 180
0
votes
0
replies
1.8k
views
Comment: Comment: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
20 months ago by Dan ▴ 180
5
votes
5
replies
1.6k
views
How to normalize the intensity of bigwig files based on a group of house-keeping genes in ATAC-seq data?
ATAC bigwig
updated 20 months ago by 82k • written 20 months ago by ▴ 180
0
votes
1
reply
1.6k
views
Comment: Comment: How to normalize the intensity of bigwig files based on a group of house-keeping
20 months ago by Dan ▴ 180
0
votes
1
reply
901
views
Comment: Comment: How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
21 months ago by Dan ▴ 180
5
votes
3
replies
901
views
How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
awk
updated 21 months ago by 3.9k • written 21 months ago by ▴ 180
3
votes
1
reply
523
views
How to change the chromosome names of the head line of fasta file?
sed
updated 22 months ago by 82k • written 22 months ago by ▴ 180
0
votes
0
replies
6.6k
views
Comment: Comment: Convert Granges list of peaks into consensus counts
22 months ago by Dan ▴ 180
0
votes
0
replies
1.8k
views
Comment: Comment: nextflow error
22 months ago by Dan ▴ 180
0
votes
0
replies
7.0k
views
Comment: Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_
22 months ago by Dan ▴ 180
14
votes
5
replies
1.8k
views
nextflow error
nextflow
22 months ago by Dan ▴ 180
0
votes
0
replies
2.5k
views
Comment: Comment: How to make a TSS enrichment plot in ATAC-seq analysis?
22 months ago by Dan ▴ 180
3
votes
3
replies
2.5k
views
How to make a TSS enrichment plot in ATAC-seq analysis?
ATAC
updated 24 days ago by • 0 • written 22 months ago by ▴ 180
4
votes
1
reply
562
views
How to define the open chromatin region in ATACseq? And how to filter the .bam file based on insert size?
ATAC
updated 22 months ago by 82k • written 22 months ago by ▴ 180
2
votes
2
replies
680
views
It is weird there are no reads less than 100 bp in qualimap.
qualimap
23 months ago by Dan ▴ 180
2
votes
0
replies
680
views
Answer: Answer: It is weird there are no reads less than 100 bp in qualimap.
23 months ago by Dan ▴ 180
0
votes
1
reply
846
views
Comment: Comment: why bowtie2 doesn’t report longer than 500bp inserts?
23 months ago by Dan ▴ 180
4
votes
3
replies
846
views
why bowtie2 doesn’t report longer than 500bp inserts?
bowtie2 BAM
updated 23 months ago by ▴ 340 • written 23 months ago by ▴ 180
3
votes
2
replies
504
views
Is it possible to subsample the especially large files during alignment using Bowtie2 or bwa?
bwa Bowtie2
updated 23 months ago by 142k • written 23 months ago by ▴ 180
0
votes
0
replies
328
views
How to choose the library normalization size in single cell RNA-seq data Preprocessing?
cell single RNA-seq
2.2 years ago by Dan ▴ 180
0
votes
0
replies
1.2k
views
Comment: Comment: Can I change the mouse symbol gene name to upper case to run GSEA using gmt file
2.2 years ago by Dan ▴ 180
0
votes
2
replies
1.2k
views
Can I change the mouse symbol gene name to upper case to run GSEA using gmt files that contain upper case gene names?
GSEA gmt
2.2 years ago by Dan ▴ 180
0
votes
0
replies
6.6k
views
Comment: Comment: Convert Granges list of peaks into consensus counts
2.2 years ago by Dan ▴ 180
0
votes
0
replies
114k
views
Comment: Comment: How To Split A Bam File By Chromosome
2.2 years ago by Dan ▴ 180
0
votes
1
reply
114k
views
Comment: Comment: How To Split A Bam File By Chromosome
2.2 years ago by Dan ▴ 180
6
votes
2
replies
859
views
Can the input file name be the same as the output file in `samtools sort`?
Samtools
updated 11 months ago by 43k • written 2.2 years ago by ▴ 180
0
votes
0
replies
647
views
How to analyze whole-genome data using Picard and GATK?
whole-genome GATK Picard
2.4 years ago by Dan ▴ 180
3
votes
2
replies
1.3k
views
Which is @RG read group in the head of bam files?
sam bam
2.4 years ago by Dan ▴ 180
0
votes
0
replies
1.3k
views
Comment: Comment: Which is @RG read group in the head of bam files?
2.4 years ago by Dan ▴ 180
85 results • Page 2 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6