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Comment: Comment: vcf2maf cosmic annotation
10 months ago by Cyriac Kandoth 6.0k
0
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1
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880
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Comment: Comment: Identify if variants are somatic or germline from VCF file
10 months ago by Cyriac Kandoth 6.0k
1
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0
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12k
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Comment: Comment: Best Hardware Solution For Medium-Size Bioinformatics Lab [15-20 Computers]
20 months ago by Cyriac Kandoth 6.0k
0
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1
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3.1k
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Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
2.5 years ago by Cyriac Kandoth 6.0k
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0
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2.2k
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Comment: Comment: Is it possible to detect of SNVs and InDels in low coverage WGS (5-10X) data?
2.7 years ago by Cyriac Kandoth 6.0k
2
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1
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929
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Comment: Comment: somatic short variant calling from patients having autoimmune disease
2.7 years ago by Cyriac Kandoth 6.0k
1
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0
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2.0k
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Comment: Comment: TCGA Sample barcode
2.9 years ago by Cyriac Kandoth 6.0k
1
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0
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2.0k
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Comment: Comment: TCGA Sample barcode
2.9 years ago by Cyriac Kandoth 6.0k
1
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0
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4.4k
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Comment: Comment: Good annotation databases for a VCF file (somatic variants)
2.9 years ago by Cyriac Kandoth 6.0k
0
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0
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55k
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Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
3.0 years ago by Cyriac Kandoth 6.0k
0
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0
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4.1k
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Comment: C: Inferring zygosity information from MAF
4.3 years ago by Cyriac Kandoth 6.0k
0
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0
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55k
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Comment: C: Working With Maf Files (Mutation Annotation Format) From The Tcga (The Cancer Ge
updated 4.3 years ago by 43k • written 9.9 years ago by 6.0k
0
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0
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2.4k
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Comment: C: genome music bmr calc-covg [Run in parallel]
updated 4.4 years ago by 43k • written 8.5 years ago by 6.0k
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0
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2.7k
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Comment: C: TCGA 2011 Ovarian Data Germline BRCA1/2 status
updated 4.5 years ago by 43k • written 8.6 years ago by 6.0k
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0
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7.6k
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Comment: C: Open positions at the Center for Molecular Oncology, MSKCC, New York
4.5 years ago by Cyriac Kandoth 6.0k
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0
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16k
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Comment: C: Installation Of The Music Suite On Unsupported Linux Distributions
updated 4.6 years ago by 43k • written 10.6 years ago by 6.0k
1
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0
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27k
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Comment: C: Human dna reference file with no prefix 'chr'
updated 4.6 years ago by 43k • written 9.5 years ago by 6.0k
0
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0
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27k
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Comment: C: Human dna reference file with no prefix 'chr'
updated 4.6 years ago by 43k • written 9.5 years ago by 6.0k
0
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0
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12k
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Comment: C: Variant allele frequency in TCGA and ICGC
updated 5.0 years ago by 43k • written 8.4 years ago by 6.0k
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0
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12k
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Comment: C: Variant allele frequency in TCGA and ICGC
updated 5.0 years ago by 43k • written 8.4 years ago by 6.0k
0
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0
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5.6k
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Comment: C: How to convert vcf to MAF ?
5.1 years ago by Cyriac Kandoth 6.0k
0
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0
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5.6k
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Comment: C: How to convert vcf to MAF ?
5.1 years ago by Cyriac Kandoth 6.0k
1
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0
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1.3k
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Comment: C: Does a no-normal pipeline exist for MuSiC?
5.8 years ago by Cyriac Kandoth 6.0k
0
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0
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3.6k
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Comment: C: Getting 1000 Genomes phase one MAF values
6.7 years ago by Cyriac Kandoth 6.0k
0
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0
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12k
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Comment: C: Karyotypically Ordered Hg19
7.2 years ago by Cyriac Kandoth 6.0k
1
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2
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3.8k
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Comment: C: RUN genome music (MuSiC2) error
7.5 years ago by Cyriac Kandoth 6.0k
0
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0
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11k
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Comment: C: TCGA CNV Files
7.6 years ago by Cyriac Kandoth 6.0k
0
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0
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16k
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Comment: C: Installation of the MuSiC suite on unsupported Linux distributions
7.6 years ago by Cyriac Kandoth 6.0k
0
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0
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16k
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Comment: C: Installation of the MuSiC suite on unsupported Linux distributions
7.6 years ago by Cyriac Kandoth 6.0k
0
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0
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3.7k
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Comment: C: annotating TCGA VCF file
7.8 years ago by Cyriac Kandoth 6.0k
0
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1
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3.0k
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Comment: C: is needed info (BAM and MAF) files for normal tissues in MUSIC?
7.8 years ago by Cyriac Kandoth 6.0k
0
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1
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8.5k
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Comment: C: From TCGA to GDC (Genomic data commons)
7.8 years ago by Cyriac Kandoth 6.0k
0
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0
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8.5k
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Comment: C: From TCGA to GDC (Genomic data commons)
7.8 years ago by Cyriac Kandoth 6.0k
0
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1
reply
7.3k
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Comment: C: TCGA VCF & MAF content
7.8 years ago by Cyriac Kandoth 6.0k
0
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0
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7.3k
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Comment: C: TCGA VCF & MAF content
7.8 years ago by Cyriac Kandoth 6.0k
0
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1
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2.5k
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Comment: C: required data files and dependences to run maf2maf and maf2vcf
7.9 years ago by Cyriac Kandoth 6.0k
0
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0
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4.0k
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Comment: C: Protein database for TCGA MAF files
8.0 years ago by Cyriac Kandoth 6.0k
0
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0
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27k
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Comment: C: Converting Vcf File To Maf
8.1 years ago by Cyriac Kandoth 6.0k
2
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1
reply
2.3k
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Comment: C: Non-coding variants in TCGA data
8.1 years ago by Cyriac Kandoth 6.0k
0
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1
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2.8k
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Comment: C: Are there recommended steps if MuSiC reports too many significantly mutated gene
8.1 years ago by Cyriac Kandoth 6.0k
0
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1
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2.8k
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Comment: C: Are there recommended steps if MuSiC reports too many significantly mutated gene
8.1 years ago by Cyriac Kandoth 6.0k
0
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0
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4.3k
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Comment: C: How to determine whether a gene is present or absent?
8.2 years ago by Cyriac Kandoth 6.0k
0
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1
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2.5k
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Comment: C: MuSiC original files for testing/ MAF, rois and soo on
8.4 years ago by Cyriac Kandoth 6.0k
0
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0
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2.5k
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Comment: C: Are there certain mutations ubiquitous in ALL cancers?
8.4 years ago by Cyriac Kandoth 6.0k
0
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0
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2.6k
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Comment: C: Finding heterozygous sites in a BAM file
8.4 years ago by Cyriac Kandoth 6.0k
7
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1
reply
55k
views
Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
updated 2.3 years ago by 43k • written 10.4 years ago by 6.0k
0
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0
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3.0k
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Comment: C: dn/ds ratio for somatic mutation
8.5 years ago by Cyriac Kandoth 6.0k
0
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0
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1.7k
views
Comment: C: How can we define the compound in KEGG KGML file .
8.5 years ago by Cyriac Kandoth 6.0k
1
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1
reply
3.0k
views
Comment: Comment: Mutations Not Recognized in MuSiC
updated 19 months ago by 43k • written 8.7 years ago by 6.0k
0
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0
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8.7k
views
Comment: Comment: MAF (minor allele frequency) calculation for finding rare variants from TCGA
updated 2.3 years ago by 43k • written 9.6 years ago by 6.0k
147 results • Page 1 of 3
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