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274
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Bcftools consensus when reference is a deletion
consensus vcf
5 months ago by selplat21 ▴ 20
0
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0
replies
275
views
Bcftools Consensus - Choose Random Allele for Heterozygous Sites
bcftools
updated 7 months ago by 44k • written 7 months ago by ▴ 20
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0
replies
348
views
Sample based on allele frequency matching between two files
linkage
updated 12 months ago by 44k • written 12 months ago by ▴ 20
0
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0
replies
625
views
Comment: Comment: Removing or Setting pairs to NA based on conditions in another data frame (R)
22 months ago by selplat21 ▴ 20
3
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2
replies
625
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Removing or Setting pairs to NA based on conditions in another data frame (R)
R
22 months ago by selplat21 ▴ 20
2
votes
2
replies
782
views
Set random genotypes to missing in VCF file by individuals and sites
imputation
22 months ago by selplat21 ▴ 20
0
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0
replies
782
views
Comment: Comment: Set random genotypes to missing in VCF file by individuals and sites
22 months ago by selplat21 ▴ 20
1
vote
5
replies
1.1k
views
Convert rows to columns delimited by each SNP ID
vcf linux bimbam
updated 22 months ago by 142k • written 22 months ago by ▴ 20
1
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0
replies
1.1k
views
Answer: Answer: Convert rows to columns delimited by each SNP ID
updated 22 months ago by 142k • written 22 months ago by ▴ 20
0
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0
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1.1k
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Comment: Comment: Convert rows to columns delimited by each SNP ID
22 months ago by selplat21 ▴ 20
0
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0
replies
1.1k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
22 months ago by selplat21 ▴ 20
0
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1
reply
1.1k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
22 months ago by selplat21 ▴ 20
1
vote
2
replies
573
views
Extract Reads with Allele Type in IGV
Genomics alignment
updated 17 months ago by 44k • written 2.2 years ago by ▴ 20
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0
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573
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Comment: Comment: Extract Reads with Allele Type in IGV
2.2 years ago by selplat21 ▴ 20
0
votes
1
reply
767
views
Comment: Comment: Add Chromosome Breaks and Labels to Continuous x-axis in R
2.3 years ago by selplat21 ▴ 20
1
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3
replies
767
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Add Chromosome Breaks and Labels to Continuous x-axis in R
R
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 20
0
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0
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763
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Comment: Comment: Loop for interval range based on chromosome sizes
2.4 years ago by selplat21 ▴ 20
2
votes
1
reply
540
views
Filter VCF file by list of sites.
vcf filtering genomics
updated 2.4 years ago by 162k • written 2.4 years ago by ▴ 20
0
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0
replies
763
views
Comment: Comment: Loop for interval range based on chromosome sizes
2.4 years ago by selplat21 ▴ 20
0
votes
3
replies
763
views
Loop for interval range based on chromosome sizes
chromosomes genomics
updated 15 months ago by 44k • written 2.4 years ago by ▴ 20
0
votes
0
replies
604
views
Modifying Genbank Contamination File for Bedtools
Genome-Assembly Linux
updated 2.8 years ago by 44k • written 2.8 years ago by ▴ 20
1
vote
1
reply
597
views
For loop to generate mean for each measurement by sex
R
updated 14 months ago by 44k • written 3.5 years ago by ▴ 20
0
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0
replies
887
views
Comment: C: Linear Model Loop in R
3.5 years ago by selplat21 ▴ 20
1
vote
6
replies
887
views
Linear Model Loop in R
R
updated 12 months ago by 44k • written 3.5 years ago by ▴ 20
0
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0
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887
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Comment: C: Linear Model Loop in R
3.5 years ago by selplat21 ▴ 20
0
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0
replies
887
views
Comment: C: Linear Model Loop in R
3.5 years ago by selplat21 ▴ 20
1
vote
1
reply
747
views
Imputation on low coverage samples
next-gen popgen imputation sequencing
3.5 years ago by selplat21 ▴ 20
1
vote
3
replies
841
views
Summing Chromosome Sizes
R sequencing
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 20
0
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0
replies
841
views
Comment: C: Summing Chromosome Sizes
3.6 years ago by selplat21 ▴ 20
0
votes
0
replies
1.2k
views
RepeatModeler - Everything works except LTR Harvest
assembly genome next-gen sequencing
3.6 years ago by selplat21 ▴ 20
0
votes
0
replies
870
views
Comment: C: Making disjoint chromosomal sites contiguous with awk
3.6 years ago by selplat21 ▴ 20
0
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1
reply
870
views
Comment: C: Making disjoint chromosomal sites contiguous with awk
3.6 years ago by selplat21 ▴ 20
0
votes
1
reply
870
views
Comment: A: Making disjoint chromosomal sites contiguous with awk
3.6 years ago by selplat21 ▴ 20
0
votes
5
replies
870
views
Making disjoint chromosomal sites contiguous with awk
awk assembly bash sequence
updated 12 months ago by 44k • written 3.6 years ago by ▴ 20
0
votes
9
replies
2.1k
views
Concatenation and Gzip Compression of Beagle Files Slow
sequencing next-gen unix bash
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 20
0
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1
reply
2.1k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
3.8 years ago by selplat21 ▴ 20
0
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1
reply
2.1k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
3.8 years ago by selplat21 ▴ 20
0
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1
reply
2.1k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
3.8 years ago by selplat21 ▴ 20
0
votes
1
reply
1.1k
views
Comment: A: Print based on character strings
3.8 years ago by selplat21 ▴ 20
1
vote
6
replies
1.1k
views
Print based on character strings
R Command Line Unix
3.8 years ago by selplat21 ▴ 20
0
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1
reply
1.1k
views
Comment: C: Print based on character strings
3.8 years ago by selplat21 ▴ 20
0
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1
reply
1.4k
views
Comment: C: For Loop to make new dataframe
3.8 years ago by selplat21 ▴ 20
5
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7
replies
1.4k
views
For Loop to make new dataframe
R Excel
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 20
0
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0
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1.4k
views
Comment: A: For Loop to make new dataframe
3.8 years ago by selplat21 ▴ 20
0
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0
replies
864
views
Comment: C: Significance testing on regression with binned data
3.9 years ago by selplat21 ▴ 20
1
vote
2
replies
864
views
Significance testing on regression with binned data
R
3.9 years ago by selplat21 ▴ 20
0
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1
reply
1.0k
views
Comment: C: Difference in means between sexes over time
3.9 years ago by selplat21 ▴ 20
2
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9
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1.0k
views
Difference in means between sexes over time
R
3.9 years ago by selplat21 ▴ 20
0
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0
replies
1.0k
views
Answer: A: Difference in means between sexes over time
3.9 years ago by selplat21 ▴ 20
0
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0
replies
1.0k
views
Comment: C: Difference in means between sexes over time
3.9 years ago by selplat21 ▴ 20
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