Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
627
views
Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
4 days ago by Chris Dean ▴ 410
1
vote
1
reply
627
views
Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
5 days ago by Chris Dean ▴ 410
0
votes
1
reply
627
views
Answer: Answer: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
5 days ago by Chris Dean ▴ 410
0
votes
1
reply
627
views
Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
9 days ago by Chris Dean ▴ 410
0
votes
1
reply
279
views
Comment: Comment: CCA with random effects model
5 weeks ago by Chris Dean ▴ 410
0
votes
0
replies
202
views
Comment: Comment: Difference in relative abundance between MicrobiomeDB and r phyloseq
6 weeks ago by Chris Dean ▴ 410
0
votes
1
reply
464
views
Comment: Comment: Differential express genes in imbalance groups
7 weeks ago by Chris Dean ▴ 410
1
vote
0
replies
700
views
Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
8 weeks ago by Chris Dean ▴ 410
0
votes
1
reply
700
views
Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
8 weeks ago by Chris Dean ▴ 410
0
votes
0
replies
286
views
Comment: Comment: UMI and index sequence in RNA-seq data
12 weeks ago by Chris Dean ▴ 410
0
votes
0
replies
406
views
Comment: Comment: How to do DESeq2 on Kallisto Data
3 months ago by Chris Dean ▴ 410
0
votes
1
reply
352
views
Comment: Comment: Decision of Random Effect and Random Slope in rare cases
3 months ago by Chris Dean ▴ 410
1
vote
0
replies
309
views
Comment: Comment: Correcting Farm effects
3 months ago by Chris Dean ▴ 410
0
votes
2
replies
413
views
Confusion about "Top Features table" in cellranger web summary output for CITE-Seq libraries
single-cell
updated 4 months ago by 82k • written 4 months ago by ▴ 410
1
vote
0
replies
525
views
Answer: Answer: Options for assigning cell labels to barcodes from CITE-seq experiment
6 months ago by Chris Dean ▴ 410
0
votes
0
replies
525
views
Comment: Comment: Options for assigning cell labels to barcodes from CITE-seq experiment
6 months ago by Chris Dean ▴ 410
2
votes
3
replies
525
views
Options for assigning cell labels to barcodes from CITE-seq experiment
single-cell
6 months ago by Chris Dean ▴ 410
0
votes
0
replies
983
views
Comment: Comment: Phyloseq sample data error: non-zero dimensions?
6 months ago by Chris Dean ▴ 410
0
votes
1
reply
983
views
Comment: Comment: Phyloseq sample data error: non-zero dimensions?
6 months ago by Chris Dean ▴ 410
0
votes
0
replies
621
views
Comment: Comment: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
6 months ago by Chris Dean ▴ 410
1
vote
1
reply
621
views
Answer: Answer: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
6 months ago by Chris Dean ▴ 410
6
votes
1
reply
6.0k
views
Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by Chris Dean ▴ 410
0
votes
1
reply
508
views
Comment: Comment: Adjusting covariate in regression model
8 months ago by Chris Dean ▴ 410
0
votes
0
replies
493
views
Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
10 months ago by Chris Dean ▴ 410
1
vote
2
replies
493
views
Assigning cell types to cells based on expression of cell surface markers
tapestri single-cell
10 months ago by Chris Dean ▴ 410
1
vote
0
replies
931
views
Comment: Comment: phyloseq error
13 months ago by Chris Dean ▴ 410
0
votes
0
replies
788
views
Comment: Comment: Database for taxonomic assignment of shotgun sequencing reads data
17 months ago by Chris Dean ▴ 410
0
votes
0
replies
767
views
Comment: Comment: Need help in using dada2
19 months ago by Chris Dean ▴ 410
0
votes
0
replies
509
views
Comment: Comment: Identification of conserved and varaible regions on 16s rRNA sequences
23 months ago by Chris Dean ▴ 410
2
votes
1
reply
1.4k
views
Comment: Comment: losing large amount of reads when using Qiime2 vsearch joinpairs command
2.0 years ago by Chris Dean ▴ 410
1
vote
1
reply
968
views
Comment: Comment: Load cvs files into R to make manhattan plots using ggplot
2.2 years ago by Chris Dean ▴ 410
1
vote
2
replies
1.1k
views
Comment: Comment: What should I choose for a bachelor's and master's degree
2.2 years ago by Chris Dean ▴ 410
0
votes
1
reply
1.1k
views
Comment: Comment: Bioinformatics Scientist
2.2 years ago by Chris Dean ▴ 410
0
votes
0
replies
847
views
Comment: Comment: Coping with duplicated sequences in shotgun analysis
2.2 years ago by Chris Dean ▴ 410
1
vote
0
replies
818
views
Comment: Comment: Name for bulk-metagenomic studies?
2.2 years ago by Chris Dean ▴ 410
2
votes
1
reply
731
views
Choosing the number of components in a DMM model
Microbiome Clustering Statistics
updated 2.3 years ago by 27k • written 2.3 years ago by ▴ 410
0
votes
1
reply
1.1k
views
Comment: Comment: Trimmomatic parameters
2.4 years ago by Chris Dean ▴ 410
0
votes
0
replies
753
views
Comment: Comment: How to calculate similarity of two bacterial compositions?
2.4 years ago by Chris Dean ▴ 410
0
votes
1
reply
753
views
Comment: Comment: How to calculate similarity of two bacterial compositions?
2.4 years ago by Chris Dean ▴ 410
0
votes
0
replies
891
views
Comment: Comment: rarefaction curve
2.4 years ago by Chris Dean ▴ 410
0
votes
1
reply
798
views
Comment: Comment: ordination analysis
2.4 years ago by Chris Dean ▴ 410
0
votes
1
reply
798
views
Answer: Answer: ordination analysis
2.4 years ago by Chris Dean ▴ 410
2
votes
1
reply
2.0k
views
Answer: Answer: extremely low classified reads from sequencing gut microbiome data, applying rea
2.5 years ago by Chris Dean ▴ 410
0
votes
0
replies
958
views
Comment: Comment: bowtie2 and then HISAT2? What does it mean in Data processing details on a paper
2.6 years ago by Chris Dean ▴ 410
0
votes
1
reply
2.5k
views
Comment: Comment: Recommended mapper
2.6 years ago by Chris Dean ▴ 410
1
vote
1
reply
2.5k
views
Answer: Answer: Recommended mapper
2.6 years ago by Chris Dean ▴ 410
0
votes
0
replies
1.4k
views
Answer: Answer: help with time series analysis
2.6 years ago by Chris Dean ▴ 410
0
votes
2
replies
1.5k
views
Comment: Comment: Subset a Vcf
2.6 years ago by Chris Dean ▴ 410
0
votes
1
reply
1.1k
views
Answer: Answer: Memory and time Estimates for 100x genome alignments
2.6 years ago by Chris Dean ▴ 410
1
vote
1
reply
1.3k
views
Answer: Answer: Type of analyses Which can be performed on Whole Genome Data
2.6 years ago by Chris Dean ▴ 410
64 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6