This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Mehulsharma.253
Mehulsharma.253
Reputation:
30
Joined:
7.7 years ago
Last seen:
7.5 years ago
Latest posts by user
0 votes
1 reply
1.6K views
Mate mismatch errors in 1000genomes CRAM files
1000genomes matepairs cram validatesam fixmate
written by Mehulsharma.253 • Mehulsharma.253
0 votes
0 replies
0 views
Comment: C: Convert specific regions in bam file to vcf and annotating the vcf
written by Mehulsharma.253 • Mehulsharma.253
0 votes
1 reply
0 views
Comment: C: How to choose good tools for identifying functional SNPs?
written by Mehulsharma.253 • Mehulsharma.253
0 votes
1 reply
3.5K views
CRAM reference registry and the GRch38 reference genome
bam samtools grch38 cram variant-calling
updated by Ram Ram • written by Mehulsharma.253 • Mehulsharma.253
0 votes
1 reply
1.8K views
Dealing with a large sample for variant calling
ngs alignment variant-calling joint-calling
updated by Ram Ram • written by Mehulsharma.253 • Mehulsharma.253
0 votes
1 reply
1 view
Comment: C: Bash vs WDL for running GATK
written by Mehulsharma.253 • Mehulsharma.253
0 votes
0 replies
1.5K views
Effect of dbSNP build differences in variant calling
grch38 dbsnp variant-calling gatk assembly
updated by Ram Ram • written by Mehulsharma.253 • Mehulsharma.253
0 votes
0 replies
1 view
Comment: C: GATK best practices for Broad-produced NGS data
written by Mehulsharma.253 • Mehulsharma.253
0 votes
3 replies
2.4K views
GATK best practices for Broad-produced NGS data
ngs gatk4 broadinstitute variant-calling
updated by Ram Ram • written by Mehulsharma.253 • Mehulsharma.253
0 votes
1 reply
6.1K views
Warning in GATK Picard MarkDuplicates
gatk picard markduplicates variant calling
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Mehulsharma.253 • Mehulsharma.253
1 vote
0 replies
1 view
Answer: A: Out Of Disk Space With Picard Tools ?
written by Mehulsharma.253 • Mehulsharma.253
0 votes
0 replies
1 view
Answer: A: Temporary Directory Problem in GATK4
written by Mehulsharma.253 • Mehulsharma.253
1 vote
0 replies
1 view
Answer: A: Setting temporary directory for GATK4 SortSam
written by Mehulsharma.253 • Mehulsharma.253
0 votes
1 reply
1 view
Comment: C: Inclusion of ALT contigs and decoys in bwa alignment
written by Mehulsharma.253 • Mehulsharma.253
0 votes
2 replies
1 view
Comment: C: Out Of Disk Space With Picard Tools ?
written by Mehulsharma.253 • Mehulsharma.253
1 vote
2 replies
4.9K views
Setting temporary directory for GATK4 SortSam
linux software error gatk4 picard tmpdir
written by Mehulsharma.253 • Mehulsharma.253
0 votes
1 reply
1 view
Comment: C: Inclusion of ALT contigs and decoys in bwa alignment
updated by ATpoint ATpoint • written by Mehulsharma.253 • Mehulsharma.253
0 votes
0 replies
1 view
Comment: C: Can someone explain what the -M option in BWA-MEM does?
written by Mehulsharma.253 • Mehulsharma.253
0 votes
4 replies
4.6K views
Bash vs WDL for running GATK
gatk linux pipeline wdl cromwell
updated by vdauwera vdauwera • written by Mehulsharma.253 • Mehulsharma.253
1 vote
6 replies
9.3K views
Inclusion of ALT contigs and decoys in bwa alignment
bwa ngs alignment hg38 bwa.kit
written by Mehulsharma.253 • Mehulsharma.253
Latest awards to user
TODO: Awards