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1
vote
0
replies
170
views
How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
dnds
kaks
VCF
7 days ago by
rohitsatyam102
▴ 850
0
votes
0
replies
5.9k
views
Comment:
Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing
7 days ago by
rohitsatyam102
▴ 850
4
votes
4
replies
488
views
Why number of interactions decreased in current string database for plasmodium
string
interactions
ppi
updated 20 days ago by
damian.szk
▴ 80 • written 21 days ago by
rohitsatyam102
▴ 850
0
votes
1
reply
488
views
Comment:
Comment: Why number of interactions decreased in current string database for plasmodium
21 days ago by
rohitsatyam102
▴ 850
0
votes
0
replies
339
views
Comment:
Comment: Coverage observed in introns in the Knockdown genes but not in knockout genes
5 weeks ago by
rohitsatyam102
▴ 850
0
votes
1
reply
339
views
Comment:
Comment: Coverage observed in introns in the Knockdown genes but not in knockout genes
5 weeks ago by
rohitsatyam102
▴ 850
0
votes
4
replies
339
views
Coverage observed in introns in the Knockdown genes but not in knockout genes
RNA-seq
STAR
IGV
5 weeks ago by
rohitsatyam102
▴ 850
0
votes
1
reply
653
views
Comment:
Comment: How to scrape this MPMP database?
3 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
653
views
Comment:
Comment: How to scrape this MPMP database?
3 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
653
views
Comment:
Comment: How to scrape this MPMP database?
3 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
653
views
Comment:
Comment: How to scrape this MPMP database?
3 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
653
views
Comment:
Comment: How to scrape this MPMP database?
3 months ago by
rohitsatyam102
▴ 850
4
votes
10
replies
653
views
How to scrape this MPMP database?
rvest
html
web-scrapping
updated 3 months ago by
Ram
43k • written 3 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
374
views
Tutorial:
Making Tile plots to show Synonymous Non-Synonymous mutation fraction
mutation
ggplotify
geom_tile
ggplot2
5 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
469
views
Tutorial:
Using easyPubMed and scholar package to get all citations of your paper
scholar
easyPubMed
6 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
621
views
Comment:
Comment: X-axis order changes in Mirrored Stacked Bar Plot
6 months ago by
rohitsatyam102
▴ 850
0
votes
4
replies
621
views
X-axis order changes in Mirrored Stacked Bar Plot
ggplot2
updated 6 months ago by
Basti
★ 2.0k • written 6 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
1.1k
views
Comment:
Comment: Computing Tajima's D from haploid SNPs
6 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
3.5k
views
Comment:
Comment: dN/dS ratio from .vcf file
6 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
2.4k
views
Comment:
Comment: Use vcf files for dN/dS calculations
6 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
2.4k
views
Comment:
Comment: Use vcf files for dN/dS calculations
6 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
87k
views
Comment:
Comment: Selecting Random Pairs From Fastq?
7 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
490
views
Choosing background for ORA using scrnaseq
scRNA-seq
RNA-seq
ORA
updated 7 months ago by
Ram
43k • written 7 months ago by
rohitsatyam102
▴ 850
2
votes
1
reply
443
views
Producing Bulk samples from 10X data
rnaseq
scrnaseq
deseq2
bulk
seurat
updated 7 months ago by
ATpoint
82k • written 7 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
730
views
Comment:
Comment: Perform Primer to Primer comparison to see and show if the primers produced are
7 months ago by
rohitsatyam102
▴ 850
1
vote
2
replies
730
views
Blog:
Perform Primer to Primer comparison to see and show if the primers produced are new or 100% similar to published primers
Primers
emboss
needle
7 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
1.3k
views
Comment:
Comment: CellRanger output more cells than specified using --force-cells? Why?
7 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
1.3k
views
Comment:
Comment: CellRanger output more cells than specified using --force-cells? Why?
8 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
1.3k
views
Comment:
Comment: CellRanger output more cells than specified using --force-cells? Why?
8 months ago by
rohitsatyam102
▴ 850
1
vote
5
replies
1.3k
views
CellRanger output more cells than specified using --force-cells? Why?
scRNA-seq
cellranger
7 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
1.1k
views
Comment:
Comment: Shannon's Entropy by Sliding Window in R
10 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
1.7k
views
Comment:
Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
11 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
1.7k
views
Comment:
Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
11 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
2.0k
views
Comment:
Comment: Extract sequence subset from multiple sequence alignment based on position in a
11 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
2.1k
views
Comment:
Comment: CNVKit for unmatched tumor-only WGS samples
13 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
734
views
Comment:
Comment: driver genes per sample or per group?
14 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
491
views
bcftools unable to tag poor variant calls properly
bcftools
gatk
vafator
updated 10 months ago by
Ram
43k • written 14 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
3.1k
views
Comment:
Comment: Where is the documentation for PacBio tool bam2fastx?
14 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
1.2k
views
Comment:
Comment: Tool to combine Germline Variant call from different variant callers
14 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
9.0k
views
Comment:
Comment: Picard Exception: Illegal Mate State
14 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
1.2k
views
Comment:
Comment: Tool to combine Germline Variant call from different variant callers
14 months ago by
rohitsatyam102
▴ 850
0
votes
3
replies
1.2k
views
Tool to combine Germline Variant call from different variant callers
haplotypecaller
gatk
snps
14 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
14k
views
Comment:
Comment: How to filter/view reads mapped to multiple locations using samtools or pysam
15 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
380
views
Queries regarding SARS-CoV2 GISAID Genomes Submission
wf-artic
COVID
GISAID
17 months ago by
rohitsatyam102
▴ 850
1
vote
0
replies
1.7k
views
Comment:
Comment: how to pass trimmed fastP output to bwa in Nextflow
18 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
1.7k
views
Comment:
Comment: how to pass trimmed fastP output to bwa in Nextflow
18 months ago by
rohitsatyam102
▴ 850
6
votes
5
replies
1.7k
views
how to pass trimmed fastP output to bwa in Nextflow
fastp
bwa
nextflow
18 months ago by
rohitsatyam102
▴ 850
0
votes
1
reply
1.7k
views
Comment:
Comment: how to pass trimmed fastP output to bwa in Nextflow
18 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
2.2k
views
Comment:
Comment: bcl2fastq dumps most of the reads as undetermined
18 months ago by
rohitsatyam102
▴ 850
0
votes
0
replies
2.2k
views
Comment:
Comment: bcl2fastq dumps most of the reads as undetermined
18 months ago by
rohitsatyam102
▴ 850
224 results • Page
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