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Comment: C: [Samtools] How many hours does it take to call SNPs and indels?
updated 4.3 years ago by 43k • written 9.9 years ago by 12k
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2.7k
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Comment: C: csfasta malformed qualities
updated 4.3 years ago by 43k • written 9.9 years ago by 12k
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2.6k
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Comment: C: Increase percentage of reads needed to call a SNP in Unified Genotyper
updated 4.3 years ago by 43k • written 9.9 years ago by 12k
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1
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13k
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Comment: C: samtools idxstats on indexed BAM failed
updated 4.3 years ago by 43k • written 9.9 years ago by 12k
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3.7k
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Comment: C: How to compute average depth of coverage for expression matrix
updated 4.3 years ago by 43k • written 9.9 years ago by 12k
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6.6k
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Comment: C: What is ref sequence name in BAM file header ?
updated 4.3 years ago by 43k • written 9.9 years ago by 12k
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6.5k
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Comment: C: How To Query The Human Chipseq Data (Encode) For A Transcription Factor Binding
updated 4.3 years ago by 43k • written 9.9 years ago by 12k
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37k
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Comment: C: Compare 2 VCF files
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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1
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4.5k
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Comment: C: sed newbie question: removing a specific letter in a word from fasta heading usi
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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4.5k
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Comment: C: sed newbie question: removing a specific letter in a word from fasta heading usi
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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1
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6.1k
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Comment: C: Is the source code for the NCBI-BLAST service available anywhere?
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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5.6k
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Comment: C: EMBOSS Needle: Read sequences from stdin
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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4.8k
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Comment: C: NGS pipeline analyses
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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9.7k
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Comment: C: TopHat paramertes " -G/--GTF <GTF/GFF3 file>
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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37k
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Comment: C: GTF annotation file for Human
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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2.6k
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Comment: C: samtools + map
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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11k
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Comment: C: Paired-End Reads Alignment For Variant Calling ?
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
4
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1
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8.4k
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Comment: C: How to start Bioinformatics ?
updated 4.3 years ago by 43k • written 10.0 years ago by 12k
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4.0k
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Comment: C: Reads mapped to another chromosome in paired-end data of RNA-seq
updated 4.3 years ago by 43k • written 9.9 years ago by 12k
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8.6k
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Comment: C: How To Write A Perl Script To Parse Fastq Files
updated 4.4 years ago by 43k • written 10.6 years ago by 12k
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1
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3.5k
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Comment: C: Exome Sequencing Alignment Question
updated 4.4 years ago by 43k • written 10.6 years ago by 12k
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1
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3.7k
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Comment: C: A Question About Samtools And Calculating Depth
updated 4.4 years ago by 43k • written 11.0 years ago by 12k
4
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1
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5.6k
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Comment: C: Log transformation of RPKM data for PCA analysis
updated 4.4 years ago by 43k • written 8.5 years ago by 12k
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2
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3.2k
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Comment: C: Conservation score for selected species
updated 4.4 years ago by 43k • written 8.6 years ago by 12k
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6.0k
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Comment: C: htseq-count overcounting non-unique alignments
updated 4.5 years ago by 43k • written 8.6 years ago by 12k
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1
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3.5k
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Comment: C: Tophat 'prep_reads error": beginning of quality values record not found!
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
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1
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3.5k
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Comment: C: Tophat 'prep_reads error": beginning of quality values record not found!
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
1
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1
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4.8k
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Comment: C: Trimmomatics parameters for WGS data quality improvement
updated 4.5 years ago by 43k • written 8.7 years ago by 12k
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1
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2.2k
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Comment: C: Tophat mapping less reads (and less properly paired) when more real -r is specif
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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4.9k
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Comment: C: Problems with STAR mapping output
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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1
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3.8k
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Comment: C: Solid / Colorspace with bowtie : ERRO -> Extra parameter(s) specified
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
1
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1
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3.8k
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Comment: C: Solid / Colorspace with bowtie : ERRO -> Extra parameter(s) specified
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
1
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0
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18k
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Comment: C: Where To Download Mouse Mm10 Dbsnp Database With Vcf Format
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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1
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5.1k
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Comment: C: error in samfile header
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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1
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5.1k
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Comment: C: error in samfile header
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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1
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3.7k
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Comment: C: Identify genes in a tophat aligned bam/sam file
updated 4.5 years ago by 43k • written 8.9 years ago by 12k
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1
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3.7k
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Comment: C: Identify genes in a tophat aligned bam/sam file
updated 4.5 years ago by 43k • written 8.9 years ago by 12k
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2
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3.7k
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Comment: C: Identify genes in a tophat aligned bam/sam file
updated 4.5 years ago by 43k • written 8.9 years ago by 12k
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0
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25k
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Comment: Comment: How to determine reference genome that was used for alignment given BAM with obs
updated 16 months ago by 43k • written 8.9 years ago by 12k
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0
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15k
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Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 4.5 years ago by 43k • written 9.2 years ago by 12k
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2.6k
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Comment: C: Annotation of Rat WGS data by AnnoVar
updated 4.5 years ago by 43k • written 9.5 years ago by 12k
1
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0
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3.1k
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Comment: C: SNP database alignment
updated 4.5 years ago by 43k • written 9.6 years ago by 12k
1
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0
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5.8k
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Comment: C: tophat- paired end reads combined in one file
updated 4.5 years ago by 43k • written 9.7 years ago by 12k
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0
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5.6k
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Comment: C: convert from solid fastq to sanger fastq
updated 4.6 years ago by 43k • written 9.7 years ago by 12k
0
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1
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3.5k
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Comment: C: Differences in read numbers - Bowtie2 output
updated 4.6 years ago by 43k • written 9.7 years ago by 12k
0
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1
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2.2k
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Comment: C: Samtools: remove reads whose mate does not map as expected
updated 4.6 years ago by 43k • written 9.8 years ago by 12k
1
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1
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5.0k
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Comment: C: Align short reads to multiple reference sequence
updated 4.6 years ago by 43k • written 9.8 years ago by 12k
0
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1
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3.7k
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Comment: C: Option "Calmd" For Whole-Exome Is Very Confusing:
updated 4.6 years ago by 43k • written 9.9 years ago by 12k
0
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1
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3.7k
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Comment: C: Option "Calmd" For Whole-Exome Is Very Confusing:
updated 4.6 years ago by 43k • written 9.9 years ago by 12k
0
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1
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9.7k
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Comment: C: TopHat paramertes " -G/--GTF <GTF/GFF3 file>
updated 4.6 years ago by 43k • written 10.0 years ago by 12k
750 results • Page 1 of 15
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