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Answer: Answer: Help with gatk CreateSequenceDictionary
updated 4 months ago by 141k • written 4 months ago by ★ 1.4k
1
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1
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1.1k
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Answer: Answer: how to use nohup with parallel
11 months ago by MatthewP ★ 1.4k
0
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0
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671
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Answer: Answer: Can we get fastq read id of certain species that kraken assigned?
11 months ago by MatthewP ★ 1.4k
1
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1
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591
views
Answer: Answer: Multiple sequence alignment of mtDNA HV1-3 in R
14 months ago by MatthewP ★ 1.4k
4
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0
replies
993
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Answer: Answer: Loading reference genome from BSgenome
20 months ago by MatthewP ★ 1.4k
1
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0
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2.9k
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Answer: Answer: Interpreting GISTIC2 output
2.4 years ago by MatthewP ★ 1.4k
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0
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1.5k
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Answer: Answer: GATK Mutect2 errors during basic variant calling
2.5 years ago by MatthewP ★ 1.4k
0
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1
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1.7k
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Answer: Answer: featureCounts low annotation rate RNA-seq
2.5 years ago by MatthewP ★ 1.4k
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0
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1.5k
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Answer: Answer: How maftools oncoplot classifies variant classifications
2.6 years ago by MatthewP ★ 1.4k
5
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0
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6.7k
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Answer: Answer: How to make a summary plot like below?
2.9 years ago by MatthewP ★ 1.4k
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0
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660
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Answer: Answer: RNA-seq different reads numbers of two samples is trouble?
2.9 years ago by MatthewP ★ 1.4k
0
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0
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2.1k
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Answer: A: What is KEGG BRITE ?
3.2 years ago by MatthewP ★ 1.4k
1
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0
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2.0k
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Answer: A: Get top-contribution variant name for PCA result
3.2 years ago by MatthewP ★ 1.4k
2
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1
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768
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Answer: A: question about R language 'for' loop
3.2 years ago by MatthewP ★ 1.4k
7
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1
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5.8k
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Answer: Answer: How to create interval list from reference fasta or dict file?
2.8 years ago by MatthewP ★ 1.4k
0
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1
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558
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Answer: A: How to combine my fq file based on sample
3.3 years ago by MatthewP ★ 1.4k
0
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0
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1.8k
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Answer: C: bedtools sort and merge
3.5 years ago by MatthewP ★ 1.4k
1
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1
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684
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Answer: A: paired reads aligned at the same genomic position
3.6 years ago by MatthewP ★ 1.4k
2
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2
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5.2k
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Answer: A: HISAT2- (ERR): hisat2-align exited with value 134
3.6 years ago by MatthewP ★ 1.4k
1
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0
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1.5k
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Answer: A: Web scraping in the KEGG db
3.7 years ago by MatthewP ★ 1.4k
0
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0
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570
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Answer: A: From Fastq to vcf
3.8 years ago by MatthewP ★ 1.4k
0
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0
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1.5k
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Answer: A: how Creat un-aligne file with bowtie?
3.8 years ago by MatthewP ★ 1.4k
1
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1
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877
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Answer: A: Does anyone have experience of methylation alignment tool "Bismark"?
3.8 years ago by MatthewP ★ 1.4k
1
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1
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964
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Answer: A: How to download matrix of the "GSE73554"
3.8 years ago by MatthewP ★ 1.4k
1
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0
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1.1k
views
Answer: A: Bismark alignment report total C base number problem.
3.8 years ago by MatthewP ★ 1.4k
4
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0
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1.2k
views
Answer: A: Barplot labeling squeezed the bars
3.8 years ago by MatthewP ★ 1.4k
3
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1
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904
views
Answer: A: Boxplot or ggplot
4.0 years ago by MatthewP ★ 1.4k
2
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1
reply
4.0k
views
Answer: A: How can I use Seurat with *_filtered_gene_bc_matrices_h5.h5 files
4.0 years ago by MatthewP ★ 1.4k
0
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1
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835
views
Answer: A: How to get a snapshot for the content of some file on Pfam ?
4.0 years ago by MatthewP ★ 1.4k
1
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1
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8.5k
views
Answer: A: gseGO: no term enriched under specific pvalueCutoff
4.0 years ago by MatthewP ★ 1.4k
0
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1
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5.6k
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Answer: A: How to do Disease-Free survival analysis with TCGA data ??
4.0 years ago by MatthewP ★ 1.4k
2
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0
replies
5.6k
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Answer: A: Best practice for analysing ATAC-seq data
4.0 years ago by MatthewP ★ 1.4k
0
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0
replies
3.4k
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Answer: A: vcf2maf VEP annotated VCF conversion
4.1 years ago by MatthewP ★ 1.4k
2
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1
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1.3k
views
Answer: C: GSEA analysis RNA-seq data
4.1 years ago by MatthewP ★ 1.4k
0
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0
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672
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Answer: A: How to remove reads supporting the same fragment that other reads support
4.1 years ago by MatthewP ★ 1.4k
3
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1
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16k
views
Answer: C: Clusterprofiler error: No gene can be mapped
4.1 years ago by MatthewP ★ 1.4k
2
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0
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19k
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Answer: A: Conversion of Gene Name to Ensemble ID
4.1 years ago by MatthewP ★ 1.4k
1
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0
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12k
views
Answer: A: Building Dict File for GATK
4.3 years ago by MatthewP ★ 1.4k
1
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0
replies
11k
views
Answer: A: Clusterprofiler gseGO and GSEA
4.3 years ago by MatthewP ★ 1.4k
0
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0
replies
2.0k
views
Answer: A: deleting TCGA replicated samples
4.3 years ago by MatthewP ★ 1.4k
3
votes
1
reply
29k
views
Answer: A: coxph "an id statement is required for multi-state models" error
4.4 years ago by MatthewP ★ 1.4k
0
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0
replies
2.5k
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Answer: A: How to annotate probes to a GEO serie matrix?
4.4 years ago by MatthewP ★ 1.4k
1
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1
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2.3k
views
Answer: A: Stringtie output gtf file only contains STRG,no original annotations
4.4 years ago by MatthewP ★ 1.4k
3
votes
0
replies
5.5k
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Answer: A: survival analysis of tcga clinical data
4.4 years ago by MatthewP ★ 1.4k
2
votes
1
reply
14k
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Answer: A: Unable to access jar file in Docker image
4.4 years ago by MatthewP ★ 1.4k
0
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0
replies
5.4k
views
Answer: A: hg38 premade index for STAR Aligner
4.5 years ago by MatthewP ★ 1.4k
3
votes
0
replies
13k
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Answer: A: Differences Between Reference Human Genome Assemblies From Different Sources
4.5 years ago by MatthewP ★ 1.4k
1
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0
replies
1.5k
views
Answer: A: GEOquery with local files
4.5 years ago by MatthewP ★ 1.4k
0
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1
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4.0k
views
Answer: A: Transcript vs. Gene TPM counts?
4.6 years ago by MatthewP ★ 1.4k
2
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0
replies
2.8k
views
Answer: A: Popular CNV detection tools
4.7 years ago by MatthewP ★ 1.4k
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