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546
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Comment: Comment: 99.9999% of Q30 bases is normal?
8 days ago by MatthewP ★ 1.4k
0
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1
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397
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Comment: Comment: A c library for reading and writing sequences in fasta and fastq format.
6 weeks ago by MatthewP ★ 1.4k
1
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2
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1.2k
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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
3 months ago by MatthewP ★ 1.4k
0
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0
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2.2k
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Comment: Comment: Should I use the basecaller Dorado to analyze my Nanopore Data?
4 months ago by MatthewP ★ 1.4k
0
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0
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392
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Comment: Comment: MSA using ggtree msaplot
4 months ago by MatthewP ★ 1.4k
10
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6
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5.7k
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How to create interval list from reference fasta or dict file?
GATK
updated 4 months ago by ▴ 100 • written 3.2 years ago by ★ 1.4k
2
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1
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405
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Answer: Answer: Help with gatk CreateSequenceDictionary
updated 4 months ago by 141k • written 4 months ago by ★ 1.4k
0
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0
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498
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Comment: Comment: ANNOVAR Error: All variants in a VCF register as "invalid genotype records in in
4 months ago by MatthewP ★ 1.4k
0
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1
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498
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Comment: Comment: ANNOVAR Error: All variants in a VCF register as "invalid genotype records in in
5 months ago by MatthewP ★ 1.4k
0
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0
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778
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Comment: Comment: What is the new Entrez login for NCBI API?
6 months ago by MatthewP ★ 1.4k
0
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0
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522
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Comment: Comment: How to deal with reads which CIGAR is [0-9]+S
6 months ago by MatthewP ★ 1.4k
0
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0
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530
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Comment: Comment: What is a tool to get the genome build of a VCF?
6 months ago by MatthewP ★ 1.4k
1
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1
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829
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Comment: Comment: how to solve the problem "Invalid character (+) in sequence"
8 months ago by MatthewP ★ 1.4k
1
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1
reply
855
views
Comment: Comment: How to make chromVAR plot?
9 months ago by MatthewP ★ 1.4k
0
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1
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987
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Comment: Comment: All question mark quality scores on several studies
10 months ago by MatthewP ★ 1.4k
0
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1
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987
views
Comment: Comment: All question mark quality scores on several studies
10 months ago by MatthewP ★ 1.4k
0
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0
replies
1.0k
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Comment: Comment: OTU, ASV and Kraken2
10 months ago by MatthewP ★ 1.4k
0
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1
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987
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Comment: Comment: All question mark quality scores on several studies
10 months ago by MatthewP ★ 1.4k
0
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1
reply
1.5k
views
Comment: Comment: End to End Solution for Multiple Sequence Alignment on Fasta Files in Python
10 months ago by MatthewP ★ 1.4k
1
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0
replies
413
views
Comment: Comment: weird behaviour on bedtools
10 months ago by MatthewP ★ 1.4k
1
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1
reply
1.1k
views
Answer: Answer: how to use nohup with parallel
10 months ago by MatthewP ★ 1.4k
0
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0
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658
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Answer: Answer: Can we get fastq read id of certain species that kraken assigned?
11 months ago by MatthewP ★ 1.4k
0
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0
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669
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Comment: Comment: Comparing variant calls
12 months ago by MatthewP ★ 1.4k
0
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1
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3.0k
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Comment: Comment: gseKEGG - no gene can be mapped (RNAseq analysis)
13 months ago by MatthewP ★ 1.4k
0
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1
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1.4k
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Comment: Comment: R:scheduled cores 1, 5 did not deliver results
14 months ago by MatthewP ★ 1.4k
1
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1
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576
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Answer: Answer: Multiple sequence alignment of mtDNA HV1-3 in R
14 months ago by MatthewP ★ 1.4k
0
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0
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2.6k
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Comment: Comment: MSA visualization python package for sequence analysis
17 months ago by MatthewP ★ 1.4k
0
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0
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752
views
Comment: Comment: How can Biostrings calculate consensus sequence without counting gaps?
18 months ago by MatthewP ★ 1.4k
0
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2
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752
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How can Biostrings calculate consensus sequence without counting gaps?
Biostrings alignment
18 months ago by MatthewP ★ 1.4k
2
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1
reply
788
views
Comment: Comment: HISAT2 running issue (output getting slower)
19 months ago by MatthewP ★ 1.4k
4
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0
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972
views
Answer: Answer: Loading reference genome from BSgenome
20 months ago by MatthewP ★ 1.4k
2
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3
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3.0k
views
How to keep sample name while using samtools mpileup + varscan to do variant call?
samtools mpileup varscan
updated 21 months ago by 141k • written 5.8 years ago by ★ 1.4k
0
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1
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1.6k
views
Comment: Comment: Set up conda rna seq analysis
21 months ago by MatthewP ★ 1.4k
0
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1
reply
1.6k
views
Comment: Comment: Set up conda rna seq analysis
21 months ago by MatthewP ★ 1.4k
1
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1
reply
1.6k
views
Comment: Comment: bowtie2 error "Unable to read file magic number"
22 months ago by MatthewP ★ 1.4k
0
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0
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968
views
Comment: Comment: How to handle 2 peaks in fastQC GC plot...
22 months ago by MatthewP ★ 1.4k
2
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5
replies
2.8k
views
Some questions about call variants for mtDNA using GATK HaplotypeCaller
GATK HaplotypeCaller mtDNA
updated 23 months ago by ▴ 130 • written 5.6 years ago by ★ 1.4k
0
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0
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928
views
Comment: Comment: featureCounts stuck
2.1 years ago by MatthewP ★ 1.4k
0
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1
reply
1.6k
views
Comment: Comment: How to do pathway enrichment analysis with genomic ranges data (ATAC-Seq peaks)?
2.2 years ago by MatthewP ★ 1.4k
4
votes
5
replies
1.6k
views
How to do pathway enrichment analysis with genomic ranges data (ATAC-Seq peaks)?
ATAC-Seq pathway annotation
updated 2.1 years ago by 4.2k • written 2.2 years ago by ★ 1.4k
1
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0
replies
2.9k
views
Comment: Comment: DiffBind missing peaks and FRiP
2.2 years ago by MatthewP ★ 1.4k
0
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0
replies
334
views
Do I need to remove ATAC-Seq large peaks?
ATAC-Seq Genrich
2.2 years ago by MatthewP ★ 1.4k
0
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0
replies
1.6k
views
Comment: Comment: Bedtools genomecov - Bam to bedgraph conversion
2.4 years ago by MatthewP ★ 1.4k
1
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0
replies
2.8k
views
Answer: Answer: Interpreting GISTIC2 output
2.4 years ago by MatthewP ★ 1.4k
0
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0
replies
1.5k
views
Answer: Answer: GATK Mutect2 errors during basic variant calling
2.4 years ago by MatthewP ★ 1.4k
0
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1
reply
1.5k
views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
2.4 years ago by MatthewP ★ 1.4k
0
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1
reply
1.7k
views
Comment: Comment: featureCounts low annotation rate RNA-seq
2.5 years ago by MatthewP ★ 1.4k
0
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1
reply
1.7k
views
Comment: Comment: featureCounts low annotation rate RNA-seq
2.5 years ago by MatthewP ★ 1.4k
0
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1
reply
1.7k
views
Answer: Answer: featureCounts low annotation rate RNA-seq
2.5 years ago by MatthewP ★ 1.4k
0
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0
replies
1.5k
views
Answer: Answer: How maftools oncoplot classifies variant classifications
2.5 years ago by MatthewP ★ 1.4k
274 results • Page 1 of 6
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