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sm.hashemin
sm.hashemin
Reputation:
90
Joined:
8.2 years ago
Last seen:
7.1 years ago
Latest posts by user
1 vote
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Answer: A: Why there is a 50% variant allele frequency in TCGA NSCLC data?
written by sm.hashemin sm.hashemin
0 votes
1 reply
2.0K views
BAF without normal control, to do or not! or how
cnvkit baf no controls theta2 theta
updated by zhouyangyu • zhouyangyu • written by sm.hashemin sm.hashemin
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Comment: C: cnvkit bgzf_read error 4 after 4 bytes
written by sm.hashemin sm.hashemin
1 vote
4 replies
4.1K views
cnvkit bgzf_read error 4 after 4 bytes
cnvkit bzip samtools
updated by Eric T. Eric T. • written by sm.hashemin sm.hashemin
1 vote
1 reply
3.6K views
Why there is a 50% variant allele frequency in TCGA NSCLC data?
tcga vaf variant alle frequency somatic snv
written by sm.hashemin sm.hashemin
0 votes
0 replies
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Comment: C: How to create a covariate file for MutSigCV using gene expression values from ot
written by sm.hashemin sm.hashemin
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1 reply
1 view
Comment: C: Visualizing CNV data based from bed or bedgraph format
written by sm.hashemin sm.hashemin
0 votes
0 replies
1 view
Answer: A: Visualizing CNV data based from bed or bedgraph format
written by sm.hashemin sm.hashemin
0 votes
6 replies
6.1K views
Visualizing CNV data based from bed or bedgraph format
cnv igv r bed bedgraph
written by sm.hashemin sm.hashemin
1 vote
0 replies
1 view
Comment: C: regions with very different VAF fall into one cluster
written by sm.hashemin sm.hashemin
0 votes
0 replies
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Comment: C: plot a bedgraph
written by sm.hashemin sm.hashemin
1 vote
0 replies
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Comment: A: regions with very different VAF fall into one cluster
written by sm.hashemin sm.hashemin
0 votes
4 replies
2.0K views
regions with very different VAF fall into one cluster
sciclone
updated by Chris Miller Chris Miller • written by sm.hashemin sm.hashemin
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0 replies
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Comment: Comment: Tumor clonality algorithms
updated by Ram Ram • written by sm.hashemin sm.hashemin
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0 replies
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Comment: C: How to add custom fields to the VCF files?
written by sm.hashemin sm.hashemin
0 votes
1 reply
1 view
Answer: A: How to add custom fields to the VCF files?
written by sm.hashemin sm.hashemin
0 votes
1 reply
1.5K views
What is a good way to compare the WES and panel seq results from the same set of samples?
exome sequencing vcf panel-seq
updated by Amitm Amitm • written by sm.hashemin sm.hashemin
0 votes
0 replies
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
written by sm.hashemin sm.hashemin
0 votes
1 reply
1 view
Comment: C: How to add sample name to the VCF files
written by sm.hashemin sm.hashemin
0 votes
1 reply
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Comment: C: How to add sample name to the VCF files
written by sm.hashemin sm.hashemin
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