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Reformatting Merged and Unmerged Paired-End Files
illumina fastp fastqc bbmap
updated 9 weeks ago by 142k • written 9 weeks ago by ▴ 230
5
votes
5
replies
1.3k
views
long view SNPs in vcf file
bcftools Variant-Calling SNP freebayes vcftools
updated 11 weeks ago by ▴ 10 • written 18 months ago by ▴ 230
1
vote
3
replies
469
views
eggNOG versus Diamond blastp
diamond eggNOG protein functional
updated 3 months ago by ★ 2.5k • written 3 months ago by ▴ 230
1
vote
2
replies
628
views
How to manage GO terms for metagenomics
metagenome gene-ontology GO
updated 3 months ago by ▴ 400 • written 19 months ago by ▴ 230
6
votes
23
replies
1.6k
views
How to speed Salmon index up
metagenome genome salmon
4 months ago by young_bioinformatician ▴ 230
0
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0
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344
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How to handle KEGG orthologous IDs involved multiple pathways
KEGG annotation metagenome functional gene
15 months ago by young_bioinformatician ▴ 230
0
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2
replies
1.2k
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How to combine eggnog and interproscan
pfam eggnog blast interproscan annotation
18 months ago by young_bioinformatician ▴ 230
0
votes
2
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659
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Change ploidy level in vcf file
vcf freebayes SNP vcftools bcftools
updated 19 months ago by 2.8k • written 19 months ago by ▴ 230
3
votes
6
replies
1.9k
views
PLINK - individual variance with the SNPs weights
plink snp variant population pca
20 months ago by young_bioinformatician ▴ 230
0
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0
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373
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How to (or not to) interpret the annotation abundance result from metagenome
gene abundance GO annotation metagenome
23 months ago by young_bioinformatician ▴ 230
0
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4
replies
720
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Considering two and more variation in polyploidy
Population SNP Variant genomic Calling
2.0 years ago by young_bioinformatician ▴ 230
0
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2
replies
727
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PCA biplot for SNPs data
SNP Calling PCA Variant
2.2 years ago by young_bioinformatician ▴ 230
1
vote
3
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758
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Constructing reference-based draft genome
Assembly genome next-gen
3.9 years ago by young_bioinformatician ▴ 230
0
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0
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632
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Schematic overview of metabolic pathways for genomic data
assembly genome pathway KEGG prokaryote
4.0 years ago by young_bioinformatician ▴ 230
4
votes
4
replies
9.9k
views
GSVA and SSGSEA for RNA-Seq TPM data
RNA-Seq GSVA R
updated 4.5 years ago by 88k • written 4.5 years ago by ▴ 230
2
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5
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1.5k
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Gene Set Enrichment Analysis
R GSEA RNA-Seq
4.6 years ago by young_bioinformatician ▴ 230
5
votes
12
replies
1.4k
views
16s RNA Results
gene sequence
updated 5.1 years ago by ▴ 40 • written 5.1 years ago by ▴ 230
2
votes
5
replies
2.0k
views
About bioinformatics thesis
RNA-Seq
updated 6.1 years ago by ▴ 230 • written 6.1 years ago by ▴ 230
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