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MarVi
MarVi
Reputation:
30
Joined:
8.3 years ago
Last seen:
5.1 years ago
Location:
Canada
Latest posts by user
1 vote
1 reply
2.0K views
Fastest way to use pysam view in order to get the reads in different regions
pysam_view samtools pysam bam optimisation
updated by Jianyu Jianyu • written by MarVi • MarVi
0 votes
1 reply
1.5K views
Pysam and CRAM file
cram pysam samtools
updated by jkbonfield jkbonfield • written by MarVi • MarVi
0 votes
0 replies
0 views
Comment: Comment: Jellyfish databases overlap
written by MarVi • MarVi
0 votes
2 replies
1.2K views
Jellyfish databases overlap
jellyfish
written by MarVi • MarVi
0 votes
0 replies
0 views
Comment: C: Sequencing Information from BAM file
written by MarVi • MarVi
0 votes
2 replies
1.2K views
Sequencing Information from BAM file
rna-seq bam alignment library
written by MarVi • MarVi
0 votes
1 reply
1.3K views
Quicker way to know if a SNV is involved in a mismatch alignment
python cpickle dictionary mismatch alignment
updated by JC JC • written by MarVi • MarVi
0 votes
0 replies
0 views
Comment: C: Preventing alignment to new Splice Junctions with STAR
written by MarVi • MarVi
0 votes
3 replies
2.9K views
Preventing alignment to new Splice Junctions with STAR
alignment sequence star splice-junctions
updated by benformatics benformatics • written by MarVi • MarVi
0 votes
0 replies
0 views
Comment: C: Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in
written by MarVi • MarVi
0 votes
3 replies
3.8K views
Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in reference genome)?
alignment soft-masked regions genome gsnap
updated by Devon Ryan Devon Ryan • written by MarVi • MarVi
0 votes
0 replies
0 views
Comment: C: Annotation Human genome transcripts, Transcript Support Level meaning
written by MarVi • MarVi
0 votes
2 replies
2.0K views
Annotation Human genome transcripts, Transcript Support Level meaning
gene annotation transcripts ensembl
updated by Emily Emily • written by MarVi • MarVi
0 votes
0 replies
1 view
Comment: C: Cufflinks merge not report Transcripts?
written by MarVi • MarVi
0 votes
2 replies
2.3K views
Cufflinks merge not report Transcripts?
cufflinks rna-seq
written by MarVi • MarVi
0 votes
0 replies
1 view
Comment: C: How to efficiently remove a list of reads according to their ID and mapped posit
written by MarVi • MarVi
0 votes
1 reply
1 view
Comment: C: How to efficiently remove a list of reads according to their ID and mapped posit
written by MarVi • MarVi
0 votes
0 replies
1 view
Comment: C: How to efficiently remove a list of reads according to their ID and mapped posit
written by MarVi • MarVi
0 votes
7 replies
3.1K views
How to efficiently remove a list of reads according to their ID and mapped position from BAM file?
samtools bam rna-seq alignment
updated by Pierre Lindenbaum Pierre Lindenbaum • written by MarVi • MarVi
0 votes
1 reply
1 view
Comment: C: Problem with Samview - retrieving reads mapped to a region
written by MarVi • MarVi
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