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2
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replies
1.2k
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Comment:
Comment: STAR mapping - regarding output files content
9 months ago by
swbarnes2
14k
0
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0
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961
views
Comment:
Comment: RSEM uses different gene lengths for each sample.
9 months ago by
swbarnes2
14k
0
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0
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727
views
Comment:
Comment: Can I extract a complete sequence of gene from mapped reads bam file
9 months ago by
swbarnes2
14k
1
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0
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1.2k
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Comment:
Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
10 months ago by
swbarnes2
14k
1
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0
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1.2k
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Comment:
Comment: Transcript quantification
11 months ago by
swbarnes2
14k
0
votes
0
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1.9k
views
Comment:
Comment: Getting sequences from fastq file using Grep command
11 months ago by
swbarnes2
14k
0
votes
0
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1.3k
views
Comment:
Comment: A question about the raw RNA-seq processing workflow
11 months ago by
swbarnes2
14k
0
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1
reply
1.3k
views
Comment:
Comment: A question about the raw RNA-seq processing workflow
11 months ago by
swbarnes2
14k
0
votes
0
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1.9k
views
Comment:
Comment: Counting intronic reads in bulk RNA-seq
11 months ago by
swbarnes2
14k
0
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1
reply
788
views
Comment:
Comment: Ambient RNA expression correction
11 months ago by
swbarnes2
14k
0
votes
0
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1.1k
views
Comment:
Comment: RNAseq Data and Pipeline
11 months ago by
swbarnes2
14k
0
votes
0
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1.1k
views
Comment:
Comment: Is there anyway to cancel CPM normalization?
11 months ago by
swbarnes2
14k
0
votes
0
replies
1.5k
views
Comment:
Comment: Single cell chemistry
11 months ago by
swbarnes2
14k
0
votes
0
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1.5k
views
Comment:
Comment: Single cell chemistry
11 months ago by
swbarnes2
14k
0
votes
1
reply
1.5k
views
Comment:
Comment: Single cell chemistry
11 months ago by
swbarnes2
14k
0
votes
1
reply
1.5k
views
Comment:
Comment: Single cell chemistry
11 months ago by
swbarnes2
14k
1
vote
0
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668
views
Comment:
Comment: Using RNA-seq to detect pathogen sequences in host tissue
11 months ago by
swbarnes2
14k
1
vote
0
replies
1.4k
views
Comment:
Comment: On "wings" in volcano plots...
12 months ago by
swbarnes2
14k
1
vote
1
reply
2.6k
views
Comment:
Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
12 months ago by
swbarnes2
14k
0
votes
0
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858
views
Comment:
Comment: How to better distribute my replicates between two batches of bulk RNAseq?
12 months ago by
swbarnes2
14k
1
vote
1
reply
1.1k
views
Comment:
Comment: t-test to check if the cancer samples are significantly different than the norma
12 months ago by
swbarnes2
14k
0
votes
1
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2.2k
views
Comment:
Comment: Obtaining TPM values from STAR alignment and counts with featurecounts using R's
12 months ago by
swbarnes2
14k
0
votes
1
reply
802
views
Comment:
Comment: Genecount-difference between HT-seq count, RSEM, and Kallisto
12 months ago by
swbarnes2
14k
0
votes
0
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645
views
Comment:
Comment: mRNA counts
12 months ago by
swbarnes2
14k
0
votes
0
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1.6k
views
Comment:
Comment: How can I make all my PCA plots the same shape using ggplots?
13 months ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Comment:
Comment: Is there anyway to cancel CPM normalization?
13 months ago by
swbarnes2
14k
0
votes
0
replies
1.4k
views
Comment:
Comment: DESeq2 multiple conditions, time points and sample types
13 months ago by
swbarnes2
14k
2
votes
0
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855
views
Comment:
Comment: trimmomatic and STAR alignments
13 months ago by
swbarnes2
14k
0
votes
1
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902
views
Comment:
Comment: How to tell which exon does a variant located?
13 months ago by
swbarnes2
14k
0
votes
0
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663
views
Comment:
Comment: HTseq no features
14 months ago by
swbarnes2
14k
0
votes
0
replies
604
views
Comment:
Comment: DESeq2
14 months ago by
swbarnes2
14k
0
votes
0
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819
views
Comment:
Comment: want the codes for Deseq2 to perform DEGs.
14 months ago by
swbarnes2
14k
0
votes
1
reply
4.8k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
15 months ago by
swbarnes2
14k
0
votes
1
reply
4.8k
views
Comment:
Comment: Get TPM from RNA counts and gene length?
15 months ago by
swbarnes2
14k
0
votes
1
reply
784
views
Comment:
Comment: sRNA seq analysis after trimming adapter
15 months ago by
swbarnes2
14k
0
votes
1
reply
928
views
Comment:
Comment: Extract unmapped reads AND reads covering chromosome 6 from a bam file?
15 months ago by
swbarnes2
14k
0
votes
0
replies
1.0k
views
Comment:
Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
15 months ago by
swbarnes2
14k
0
votes
1
reply
1.0k
views
Comment:
Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
15 months ago by
swbarnes2
14k
0
votes
1
reply
1.0k
views
Comment:
Comment: What's the absolute easiest way of visualizing stranded RNA-seq data on custom g
15 months ago by
swbarnes2
14k
1
vote
0
replies
1.7k
views
Comment:
Comment: Mapped reads not mapping to a real sequence?
15 months ago by
swbarnes2
14k
2
votes
2
replies
1.3k
views
Comment:
Comment: Question about RNA-Seq data alignment
updated 15 months ago by
ATpoint
82k • written 15 months ago by
swbarnes2
14k
0
votes
1
reply
1.7k
views
Comment:
Comment: Mapped reads not mapping to a real sequence?
15 months ago by
swbarnes2
14k
1
vote
0
replies
1.6k
views
Comment:
Comment: RNAseq for DE purpose
15 months ago by
swbarnes2
14k
2
votes
0
replies
614
views
Comment:
Comment: Analyzing bulk RNA-seq
15 months ago by
swbarnes2
14k
1
vote
1
reply
1.2k
views
Comment:
Comment: How to change every third line in a fastq library
15 months ago by
swbarnes2
14k
0
votes
0
replies
658
views
Comment:
Comment: CanĀ“t acces Biomart via R anymore
16 months ago by
swbarnes2
14k
1
vote
0
replies
1.5k
views
Comment:
Comment: How to configure a data set with mouse data to one with human gene names using a
16 months ago by
swbarnes2
14k
0
votes
1
reply
1.6k
views
Comment:
Comment: how to get fastq file from cellranger?
17 months ago by
swbarnes2
14k
0
votes
1
reply
1.6k
views
Comment:
Comment: how to get fastq file from cellranger?
17 months ago by
swbarnes2
14k
1
vote
2
replies
926
views
Comment:
Comment: drawing Venn graph
17 months ago by
swbarnes2
14k
1,028 results • Page
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