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Comment: Comment: PCA plot (Suggestions Needed)
8 hours ago by swbarnes2 14k
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707
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Comment: Comment: Adding CB tag to bam file
17 hours ago by swbarnes2 14k
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430
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Comment: Comment: PCA plot (Suggestions Needed)
17 hours ago by swbarnes2 14k
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430
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Comment: Comment: PCA plot (Suggestions Needed)
20 hours ago by swbarnes2 14k
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1
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356
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Comment: Comment: To get p-values for the TPM
20 hours ago by swbarnes2 14k
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264
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Comment: Comment: Should I use unpaired reads from trimmomatic
1 day ago by swbarnes2 14k
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182
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Answer: Answer: from row count to tpm
2 days ago by swbarnes2 14k
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1
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433
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Comment: Comment: Marking duplicates using UMIs
4 days ago by swbarnes2 14k
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464
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Comment: Comment: Free/open source 23andme-like analysis
5 days ago by swbarnes2 14k
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1.2k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
5 days ago by swbarnes2 14k
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1
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707
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Comment: Comment: Adding CB tag to bam file
5 days ago by swbarnes2 14k
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693
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Comment: Comment: RNA seq differential expression analysis
6 days ago by swbarnes2 14k
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707
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Answer: Answer: Adding CB tag to bam file
6 days ago by swbarnes2 14k
2
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617
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
7 days ago by swbarnes2 14k
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558
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
23 days ago by swbarnes2 14k
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1
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558
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
23 days ago by swbarnes2 14k
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391
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
23 days ago by swbarnes2 14k
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405
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
26 days ago by swbarnes2 14k
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321
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Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
5 weeks ago by swbarnes2 14k
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290
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Answer: Answer: Detecting viruses in human rna seq data
5 weeks ago by swbarnes2 14k
1
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1
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398
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Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
5 weeks ago by swbarnes2 14k
2
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0
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524
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
5 weeks ago by swbarnes2 14k
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0
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550
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Comment: Comment: RNA_seq
5 weeks ago by swbarnes2 14k
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1
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550
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Answer: Answer: RNA_seq
6 weeks ago by swbarnes2 14k
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0
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355
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
6 weeks ago by swbarnes2 14k
2
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0
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368
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Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
6 weeks ago by swbarnes2 14k
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1
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519
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Answer: Answer: RNA Seq Sample Outlier
6 weeks ago by swbarnes2 14k
1
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1
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387
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Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
7 weeks ago by swbarnes2 14k
1
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1
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423
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Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
7 weeks ago by swbarnes2 14k
2
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1
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293
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Answer: Answer: Single cell rna sequencing analysis using R help
7 weeks ago by swbarnes2 14k
3
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0
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402
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Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
7 weeks ago by swbarnes2 14k
1
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0
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239
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Answer: Answer: biological replicate in STAR command
8 weeks ago by swbarnes2 14k
1
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0
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365
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Answer: Answer: PCA plot analysis
8 weeks ago by swbarnes2 14k
0
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1
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431
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Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
9 weeks ago by swbarnes2 14k
2
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0
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307
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Comment: Comment: Getting less DE genes when incorporating all samples
10 weeks ago by swbarnes2 14k
1
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0
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444
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Comment: Comment: Count table statistical analysis
10 weeks ago by swbarnes2 14k
1
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1
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539
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
11 weeks ago by swbarnes2 14k
0
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0
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539
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Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
11 weeks ago by swbarnes2 14k
1
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0
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575
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Comment: Comment: Three fastq files
11 weeks ago by swbarnes2 14k
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0
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482
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Comment: Comment: Differential gene expression design using Deseq2
11 weeks ago by swbarnes2 14k
0
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
12 weeks ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
12 weeks ago by swbarnes2 14k
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0
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552
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Answer: Answer: Help interpreting Samtools Flagstat results
3 months ago by swbarnes2 14k
0
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0
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452
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
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1
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452
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
0
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0
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649
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Comment: Comment: No tumour cells in clustering of tumor sample?!
3 months ago by swbarnes2 14k
0
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0
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689
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Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
0
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1
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689
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Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
1
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0
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314
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Answer: Answer: Interpretation of output from MiXCR TCR sequencing
3 months ago by swbarnes2 14k
0
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0
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347
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Answer: Answer: Strand information from reverse stranded RNA-seq
4 months ago by swbarnes2 14k
1,998 results • Page 1 of 40
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