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Comment: Comment: Differential Expression Analysis using DESeq2 in R
1 day ago by swbarnes2 14k
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322
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
1 day ago by swbarnes2 14k
1
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0
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674
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Comment: Comment: PCA plot (Suggestions Needed)
9 days ago by swbarnes2 14k
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1
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892
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Comment: Comment: Adding CB tag to bam file
10 days ago by swbarnes2 14k
1
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0
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674
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Comment: Comment: PCA plot (Suggestions Needed)
10 days ago by swbarnes2 14k
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0
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674
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Comment: Comment: PCA plot (Suggestions Needed)
10 days ago by swbarnes2 14k
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1
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515
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Comment: Comment: To get p-values for the TPM
10 days ago by swbarnes2 14k
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354
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Comment: Comment: Should I use unpaired reads from trimmomatic
11 days ago by swbarnes2 14k
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1
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496
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Comment: Comment: Marking duplicates using UMIs
13 days ago by swbarnes2 14k
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0
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516
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Comment: Comment: Free/open source 23andme-like analysis
14 days ago by swbarnes2 14k
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0
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1.3k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
14 days ago by swbarnes2 14k
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1
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892
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Comment: Comment: Adding CB tag to bam file
14 days ago by swbarnes2 14k
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0
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772
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Comment: Comment: RNA seq differential expression analysis
16 days ago by swbarnes2 14k
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1
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604
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
4 weeks ago by swbarnes2 14k
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432
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
4 weeks ago by swbarnes2 14k
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427
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
5 weeks ago by swbarnes2 14k
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0
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576
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Comment: Comment: RNA_seq
7 weeks ago by swbarnes2 14k
2
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0
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321
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Comment: Comment: Getting less DE genes when incorporating all samples
11 weeks ago by swbarnes2 14k
1
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455
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Comment: Comment: Count table statistical analysis
11 weeks ago by swbarnes2 14k
1
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1
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575
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
12 weeks ago by swbarnes2 14k
1
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0
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594
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Comment: Comment: Three fastq files
12 weeks ago by swbarnes2 14k
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0
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502
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Comment: Comment: Differential gene expression design using Deseq2
3 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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462
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
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0
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689
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Comment: Comment: No tumour cells in clustering of tumor sample?!
3 months ago by swbarnes2 14k
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0
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733
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Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
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1
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733
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Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
0
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0
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637
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Comment: Comment: bcl2fastq problems with the yield
4 months ago by swbarnes2 14k
1
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1
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670
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Comment: Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
4 months ago by swbarnes2 14k
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0
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827
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Comment: Comment: STAR ALIGNMENT
5 months ago by swbarnes2 14k
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1
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843
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
5 months ago by swbarnes2 14k
1
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0
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976
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Comment: Comment: deal with PCA and my samples
6 months ago by swbarnes2 14k
0
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1
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1.3k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by swbarnes2 14k
1
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1
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1.3k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by swbarnes2 14k
0
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1
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599
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
6 months ago by swbarnes2 14k
0
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0
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756
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Comment: Comment: DESeq2: DESeqDataSetFromMatrix Error
6 months ago by swbarnes2 14k
0
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0
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543
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Comment: Comment: Use SAM files in ref_map.pl
7 months ago by swbarnes2 14k
0
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0
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631
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Comment: Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
7 months ago by swbarnes2 14k
1
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1
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1.1k
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Comment: Comment: Adding a control sample to bulk RNA-seq
7 months ago by swbarnes2 14k
0
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0
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739
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Comment: Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
7 months ago by swbarnes2 14k
1
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0
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577
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
7 months ago by swbarnes2 14k
0
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1
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581
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Comment: Comment: htseq-count reports count values for deleted genes
7 months ago by swbarnes2 14k
0
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0
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751
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Comment: Comment: How to Add Mutations to the sequence
8 months ago by swbarnes2 14k
0
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0
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1.4k
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Comment: Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
8 months ago by swbarnes2 14k
2
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0
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1.2k
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Comment: Comment: STAR mapping - regarding output files content
8 months ago by swbarnes2 14k
0
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0
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940
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Comment: Comment: RSEM uses different gene lengths for each sample.
9 months ago by swbarnes2 14k
0
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0
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716
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Comment: Comment: Can I extract a complete sequence of gene from mapped reads bam file
9 months ago by swbarnes2 14k
1
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0
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1.1k
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Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
9 months ago by swbarnes2 14k
1
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0
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1.2k
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Comment: Comment: Transcript quantification
10 months ago by swbarnes2 14k
1,023 results • Page 1 of 21
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