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Comment: Comment: Differential Expression Analysis using DESeq2 in R
1 day ago by swbarnes2 14k
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130
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Answer: Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
1 day ago by swbarnes2 14k
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331
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Comment: Comment: Differential Expression Analysis using DESeq2 in R
1 day ago by swbarnes2 14k
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325
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Answer: Answer: Sequence read length shorter than flow cell specification
9 days ago by swbarnes2 14k
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676
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Comment: Comment: PCA plot (Suggestions Needed)
10 days ago by swbarnes2 14k
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895
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Comment: Comment: Adding CB tag to bam file
10 days ago by swbarnes2 14k
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676
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Comment: Comment: PCA plot (Suggestions Needed)
10 days ago by swbarnes2 14k
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676
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Comment: Comment: PCA plot (Suggestions Needed)
10 days ago by swbarnes2 14k
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516
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Comment: Comment: To get p-values for the TPM
10 days ago by swbarnes2 14k
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355
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Comment: Comment: Should I use unpaired reads from trimmomatic
11 days ago by swbarnes2 14k
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290
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Answer: Answer: from row count to tpm
12 days ago by swbarnes2 14k
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498
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Comment: Comment: Marking duplicates using UMIs
14 days ago by swbarnes2 14k
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516
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Comment: Comment: Free/open source 23andme-like analysis
15 days ago by swbarnes2 14k
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1.3k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
15 days ago by swbarnes2 14k
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895
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Comment: Comment: Adding CB tag to bam file
15 days ago by swbarnes2 14k
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772
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Comment: Comment: RNA seq differential expression analysis
16 days ago by swbarnes2 14k
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895
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Answer: Answer: Adding CB tag to bam file
16 days ago by swbarnes2 14k
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685
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
17 days ago by swbarnes2 14k
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605
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Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
4 weeks ago by swbarnes2 14k
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605
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
4 weeks ago by swbarnes2 14k
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433
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
4 weeks ago by swbarnes2 14k
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427
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
5 weeks ago by swbarnes2 14k
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331
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Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
6 weeks ago by swbarnes2 14k
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303
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Answer: Answer: Detecting viruses in human rna seq data
6 weeks ago by swbarnes2 14k
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419
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Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
6 weeks ago by swbarnes2 14k
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562
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Answer: Answer: Overriding a color palette in R to emphasize specific data points
7 weeks ago by swbarnes2 14k
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576
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Comment: Comment: RNA_seq
7 weeks ago by swbarnes2 14k
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1
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576
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Answer: Answer: RNA_seq
7 weeks ago by swbarnes2 14k
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372
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
7 weeks ago by swbarnes2 14k
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381
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Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
8 weeks ago by swbarnes2 14k
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1
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540
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Answer: Answer: RNA Seq Sample Outlier
8 weeks ago by swbarnes2 14k
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402
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Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
8 weeks ago by swbarnes2 14k
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1
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451
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Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
8 weeks ago by swbarnes2 14k
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1
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315
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Answer: Answer: Single cell rna sequencing analysis using R help
8 weeks ago by swbarnes2 14k
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425
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Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
8 weeks ago by swbarnes2 14k
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251
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Answer: Answer: biological replicate in STAR command
9 weeks ago by swbarnes2 14k
1
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392
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Answer: Answer: PCA plot analysis
9 weeks ago by swbarnes2 14k
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1
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448
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Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
10 weeks ago by swbarnes2 14k
2
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321
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Comment: Comment: Getting less DE genes when incorporating all samples
11 weeks ago by swbarnes2 14k
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456
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Comment: Comment: Count table statistical analysis
11 weeks ago by swbarnes2 14k
1
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1
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577
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
12 weeks ago by swbarnes2 14k
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0
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577
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Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
12 weeks ago by swbarnes2 14k
1
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0
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595
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Comment: Comment: Three fastq files
12 weeks ago by swbarnes2 14k
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0
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502
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Comment: Comment: Differential gene expression design using Deseq2
3 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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0
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572
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Answer: Answer: Help interpreting Samtools Flagstat results
3 months ago by swbarnes2 14k
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0
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462
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
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1
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462
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
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0
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689
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Comment: Comment: No tumour cells in clustering of tumor sample?!
3 months ago by swbarnes2 14k
2,002 results • Page 1 of 41
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