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Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
12 weeks ago by swbarnes2 14k
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368
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Answer: Answer: Single cell rna sequencing analysis using R help
12 weeks ago by swbarnes2 14k
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488
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Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
12 weeks ago by swbarnes2 14k
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0
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274
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Answer: Answer: biological replicate in STAR command
3 months ago by swbarnes2 14k
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0
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448
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Answer: Answer: PCA plot analysis
3 months ago by swbarnes2 14k
0
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1
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483
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Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
3 months ago by swbarnes2 14k
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357
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Comment: Comment: Getting less DE genes when incorporating all samples
3 months ago by swbarnes2 14k
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487
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Comment: Comment: Count table statistical analysis
3 months ago by swbarnes2 14k
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641
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by swbarnes2 14k
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0
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641
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Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
3 months ago by swbarnes2 14k
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0
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646
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Comment: Comment: Three fastq files
3 months ago by swbarnes2 14k
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0
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530
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Comment: Comment: Differential gene expression design using Deseq2
3 months ago by swbarnes2 14k
2
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1
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1.2k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
4 months ago by swbarnes2 14k
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1.2k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
4 months ago by swbarnes2 14k
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624
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Answer: Answer: Help interpreting Samtools Flagstat results
4 months ago by swbarnes2 14k
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520
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
4 months ago by swbarnes2 14k
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520
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
4 months ago by swbarnes2 14k
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754
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Comment: Comment: No tumour cells in clustering of tumor sample?!
4 months ago by swbarnes2 14k
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838
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Comment: Comment: DESeq2 heatmap with low baseMean values
4 months ago by swbarnes2 14k
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1
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838
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Comment: Comment: DESeq2 heatmap with low baseMean values
4 months ago by swbarnes2 14k
2
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0
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379
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Answer: Answer: Interpretation of output from MiXCR TCR sequencing
5 months ago by swbarnes2 14k
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379
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Answer: Answer: Strand information from reverse stranded RNA-seq
5 months ago by swbarnes2 14k
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663
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Comment: Comment: bcl2fastq problems with the yield
5 months ago by swbarnes2 14k
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1
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663
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Answer: Answer: bcl2fastq problems with the yield
5 months ago by swbarnes2 14k
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725
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Comment: Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
5 months ago by swbarnes2 14k
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0
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517
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Answer: Answer: Are 10x cellranger-arc ATAC bam files deduplicated?
6 months ago by swbarnes2 14k
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0
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416
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Answer: Answer: Bulk and Single Cell RNA-seq online course
6 months ago by swbarnes2 14k
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0
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890
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Answer: Answer: STAR ALIGNMENT
6 months ago by swbarnes2 14k
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890
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Comment: Comment: STAR ALIGNMENT
6 months ago by swbarnes2 14k
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1
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1.1k
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Answer: Answer: Handling multiple fastq files per sample, per lane, per read out of the Cellrang
6 months ago by swbarnes2 14k
0
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1
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929
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
6 months ago by swbarnes2 14k
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0
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816
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Answer: Answer: RNAseq how to map Mouse+Virus Genome with STAR
6 months ago by swbarnes2 14k
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0
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1.0k
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Comment: Comment: deal with PCA and my samples
7 months ago by swbarnes2 14k
2
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0
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779
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Answer: Answer: batch correction in DESeq2
7 months ago by swbarnes2 14k
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1
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1.5k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
7 months ago by swbarnes2 14k
1
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1
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1.5k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
7 months ago by swbarnes2 14k
0
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1
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638
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
7 months ago by swbarnes2 14k
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0
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487
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Answer: Answer: Help with DESeq2 Analysis of Multiple Conditions
7 months ago by swbarnes2 14k
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0
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796
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Comment: Comment: DESeq2: DESeqDataSetFromMatrix Error
7 months ago by swbarnes2 14k
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1
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796
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Answer: Answer: DESeq2: DESeqDataSetFromMatrix Error
7 months ago by swbarnes2 14k
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0
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564
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Comment: Comment: Use SAM files in ref_map.pl
7 months ago by swbarnes2 14k
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0
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667
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Comment: Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
7 months ago by swbarnes2 14k
1
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940
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Answer: Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
8 months ago by swbarnes2 14k
1
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1
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797
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Answer: Answer: DESeq2 analysis using two featureCounts generated from different studies
8 months ago by swbarnes2 14k
1
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1
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1.1k
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Comment: Comment: Adding a control sample to bulk RNA-seq
8 months ago by swbarnes2 14k
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0
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761
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Comment: Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
8 months ago by swbarnes2 14k
5
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1
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1.1k
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Answer: Answer: Adding a control sample to bulk RNA-seq
8 months ago by swbarnes2 14k
1
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0
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622
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
8 months ago by swbarnes2 14k
2
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0
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562
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Answer: Answer: DESeq2 design comparing changes through 2 timepoints of 2 different treatments.
8 months ago by swbarnes2 14k
0
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0
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526
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Answer: Answer: sequencing machines output files layout
8 months ago by swbarnes2 14k
2,020 results • Page 2 of 41
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