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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
12 weeks ago by Joel Wallenius ▴ 210
0
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1
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834
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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
12 weeks ago by Joel Wallenius ▴ 210
0
votes
0
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834
views
Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
12 weeks ago by Joel Wallenius ▴ 210
2
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6
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834
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What is the expected number of common/mutual/shared SNVs between two, three, four... unrelated individuals?
snv genomics variation snp human
12 weeks ago by Joel Wallenius ▴ 210
4
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8
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1.4k
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Locating IBD candidates with just VCF files
Relatedness Genotypes IBD Haplotypes VCF
12 weeks ago by Joel Wallenius ▴ 210
3
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0
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1.4k
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Answer: Answer: Locating IBD candidates with just VCF files
12 weeks ago by Joel Wallenius ▴ 210
0
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1
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474
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GATK's CNV-caller output, genotype code?
GATK CNV NGS
updated 3 months ago by • 0 • written 20 months ago by ▴ 210
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2.5k
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Comment: Comment: Using ExomeDepth for GRCH38 processed samples to call CNVs
8 months ago by Joel Wallenius ▴ 210
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1
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2.5k
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Comment: Comment: Using ExomeDepth for GRCH38 processed samples to call CNVs
8 months ago by Joel Wallenius ▴ 210
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0
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43k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
8 months ago by Joel Wallenius ▴ 210
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1
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43k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
8 months ago by Joel Wallenius ▴ 210
0
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1
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43k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
8 months ago by Joel Wallenius ▴ 210
0
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1
reply
43k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
8 months ago by Joel Wallenius ▴ 210
0
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0
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5.4k
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Comment: Comment: Calculating FPKM and TPM by hand from htseq-count output?
9 months ago by Joel Wallenius ▴ 210
0
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0
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858
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Comment: Comment: Are there any ways to delete multiple jobs at Ensembl VEP?
9 months ago by Joel Wallenius ▴ 210
0
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1
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761
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Comment: Comment: Parallel GWAS?
10 months ago by Joel Wallenius ▴ 210
0
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2
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761
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Comment: Comment: Parallel GWAS?
10 months ago by Joel Wallenius ▴ 210
0
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6
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761
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Parallel GWAS?
GWAS Parallel Chromosome
updated 10 months ago by 11k • written 10 months ago by ▴ 210
1
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1
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1.3k
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Comment: Comment: How to reconstruct a genome from a contigs file?
11 months ago by Joel Wallenius ▴ 210
2
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1
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1.3k
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Answer: Answer: How to reconstruct a genome from a contigs file?
11 months ago by Joel Wallenius ▴ 210
2
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4
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730
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Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
Mapping Variant-calling masking
updated 11 months ago by 142k • written 11 months ago by ▴ 210
2
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1
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730
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Answer: Answer: Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
11 months ago by Joel Wallenius ▴ 210
0
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0
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730
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Comment: Comment: Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
11 months ago by Joel Wallenius ▴ 210
2
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1
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997
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Answer: Answer: Retrieving allele-specific information for a variant using VEP annotation
11 months ago by Joel Wallenius ▴ 210
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0
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3.6k
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Comment: Comment: samtools collate runs out of temporary storage space: no -T option!
12 months ago by Joel Wallenius ▴ 210
0
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0
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389
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What are the WES-specific settings when running GATK's variant recalibration step?
WES GATK recalibration exome
12 months ago by Joel Wallenius ▴ 210
0
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1
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1.4k
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Comment: Comment: Locating IBD candidates with just VCF files
17 months ago by Joel Wallenius ▴ 210
0
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1
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1.4k
views
Comment: Comment: Locating IBD candidates with just VCF files
17 months ago by Joel Wallenius ▴ 210
0
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1
reply
1.4k
views
Comment: Comment: Locating IBD candidates with just VCF files
17 months ago by Joel Wallenius ▴ 210
0
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0
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341
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A program that detects similar regions between samples in a multi-sample VCF file?
Relatedness IBD Haplotypes
19 months ago by Joel Wallenius ▴ 210
0
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0
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2.4k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by Joel Wallenius ▴ 210
0
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0
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288
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How many SNPs are needed to perform haplotype analysis on siblings and their mother?
haplotype linkage SNP pedigree
19 months ago by Joel Wallenius ▴ 210
0
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1
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2.4k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by Joel Wallenius ▴ 210
0
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0
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2.4k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by Joel Wallenius ▴ 210
0
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1
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2.4k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by Joel Wallenius ▴ 210
0
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1
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2.4k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by Joel Wallenius ▴ 210
0
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1
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2.4k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by Joel Wallenius ▴ 210
0
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0
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2.4k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
20 months ago by Joel Wallenius ▴ 210
0
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0
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2.4k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
20 months ago by Joel Wallenius ▴ 210
0
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2
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2.4k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
20 months ago by Joel Wallenius ▴ 210
0
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0
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2.4k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
20 months ago by Joel Wallenius ▴ 210
0
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1
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2.4k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
20 months ago by Joel Wallenius ▴ 210
2
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22
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2.4k
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6 follow
Find ~1 Mb regions of genome that are shared by two or more WGS samples?
pedigree linkage genetics
19 months ago by Joel Wallenius ▴ 210
0
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1
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1.1k
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Comment: Comment: Can you not phase exome data?
21 months ago by Joel Wallenius ▴ 210
0
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1
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1.1k
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Comment: Comment: Can you not phase exome data?
21 months ago by Joel Wallenius ▴ 210
5
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6
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1.1k
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Can you not phase exome data?
phasing shapeit wes exome beagle
updated 21 months ago by 4.2k • written 21 months ago by ▴ 210
0
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0
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768
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Comment: Comment: How to properly subset a bam file?
21 months ago by Joel Wallenius ▴ 210
2
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2
replies
768
views
How to properly subset a bam file?
bam subset truncate
21 months ago by Joel Wallenius ▴ 210
6
votes
7
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1.9k
views
Convert a BAM from GRCh37 to hg19?
GRCh37 hg19 BAM
updated 22 months ago by 43k • written 22 months ago by ▴ 210
0
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0
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1.9k
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Comment: Comment: Convert a BAM from GRCh37 to hg19?
22 months ago by Joel Wallenius ▴ 210
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