Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.6k
views
Comment: Comment: Cellcyclescoring did not work in Seurat V5
5 months ago by bk11 ★ 2.5k
2
votes
2
replies
601
views
Answer: Answer: Alternatives to snpflip to find ambigious and flipped snps
6 months ago by bk11 ★ 2.5k
1
vote
1
reply
479
views
Comment: Comment: Quality control on imputed genotypes for GWAS / application of PGS
6 months ago by bk11 ★ 2.5k
2
votes
0
replies
1.7k
views
Answer: Answer: keep getting error while trying to convert Seurat object into a H5ad file
6 months ago by bk11 ★ 2.5k
0
votes
1
reply
1.0k
views
Comment: Comment: scRNA-seq quality control
6 months ago by bk11 ★ 2.5k
1
vote
1
reply
914
views
Comment: Comment: duplicates issues when trying to convert long to wide in R
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
521
views
Answer: Answer: Perform PCA
6 months ago by bk11 ★ 2.5k
1
vote
1
reply
914
views
Answer: Answer: duplicates issues when trying to convert long to wide in R
6 months ago by bk11 ★ 2.5k
1
vote
1
reply
501
views
Comment: Comment: A question about the missing or not observed alleles in PLINK datasets
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
417
views
Answer: Answer: Should I apply doublet detection for each pool seperately?
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
680
views
Comment: Comment: convert matrix files from 10X (single cell) to h5 file
6 months ago by bk11 ★ 2.5k
1
vote
0
replies
465
views
Answer: Answer: LD D-prime (D') calculation
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
506
views
Answer: Answer: Plink Error
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
497
views
Answer: Answer: XLOC gene id
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
670
views
Answer: Answer: PLINK Error: No valid entries in --score file
6 months ago by bk11 ★ 2.5k
1
vote
0
replies
881
views
Comment: Comment: Read multiple vcf files into R
6 months ago by bk11 ★ 2.5k
1
vote
0
replies
601
views
Answer: Answer: how to merge multiple files based on column header
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
1
reply
493
views
Comment: Comment: Normalized data values very different from unnormalized counts in Seurat
6 months ago by bk11 ★ 2.5k
1
vote
1
reply
962
views
Comment: Comment: A question about genotyping rate
6 months ago by bk11 ★ 2.5k
0
votes
1
reply
962
views
Comment: Comment: A question about genotyping rate
6 months ago by bk11 ★ 2.5k
0
votes
1
reply
962
views
Comment: Comment: A question about genotyping rate
6 months ago by bk11 ★ 2.5k
3
votes
1
reply
797
views
Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
6 months ago by bk11 ★ 2.5k
0
votes
1
reply
856
views
Answer: Answer: Doheatmap in seurat
6 months ago by bk11 ★ 2.5k
3
votes
0
replies
403
views
Answer: Answer: How to retrieve the number of reads mapped for each chromosome in the BAM file o
6 months ago by bk11 ★ 2.5k
0
votes
1
reply
756
views
Comment: Comment: Bowtie2/Fastq-dump problem
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
614
views
Comment: Comment: will using samtools merge to multiple bam files also remove the redundancy ?
6 months ago by bk11 ★ 2.5k
1
vote
1
reply
741
views
Answer: Answer: FPKM values for DE analysis - Why?
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
734
views
Comment: Comment: error in Fastq
6 months ago by bk11 ★ 2.5k
0
votes
1
reply
937
views
Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
488
views
Comment: Comment: How do I add sample annotations to this data?
6 months ago by bk11 ★ 2.5k
1
vote
1
reply
550
views
Answer: Answer: How do I remove duplicate SNPs in PLINK from more than 1 data set?
6 months ago by bk11 ★ 2.5k
0
votes
1
reply
615
views
Comment: Comment: No valid chromosomes found! on Michigan Imputation Server
6 months ago by bk11 ★ 2.5k
4
votes
0
replies
754
views
Answer: Answer: Annoate complex heatmap columns
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
563
views
Answer: Answer: What do HAP A1 and HAP A2 mean in plink --freqx output?
6 months ago by bk11 ★ 2.5k
2
votes
1
reply
591
views
Comment: Comment: Can I still remove ambient RNA if I do not have raw barcode-gene matrix?
6 months ago by bk11 ★ 2.5k
0
votes
0
replies
1.0k
views
Comment: Comment: Cannot add new cells with NormalizeData from seurat
7 months ago by bk11 ★ 2.5k
0
votes
1
reply
1.6k
views
Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
7 months ago by bk11 ★ 2.5k
0
votes
1
reply
1.6k
views
Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
7 months ago by bk11 ★ 2.5k
0
votes
1
reply
1.6k
views
Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
7 months ago by bk11 ★ 2.5k
0
votes
1
reply
1.6k
views
Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
7 months ago by bk11 ★ 2.5k
0
votes
2
replies
1.6k
views
Comment: Comment: Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cel
7 months ago by bk11 ★ 2.5k
3
votes
0
replies
590
views
Comment: Comment: PLINK .ped file issue
7 months ago by bk11 ★ 2.5k
2
votes
1
reply
565
views
Answer: Answer: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
7 months ago by bk11 ★ 2.5k
1
vote
1
reply
1.5k
views
Answer: Answer: Seurat changing order cluster shown in the violin plot
7 months ago by bk11 ★ 2.5k
0
votes
0
replies
489
views
Answer: Answer: Changing LFC font size on Complex Heatmap
7 months ago by bk11 ★ 2.5k
0
votes
0
replies
402
views
Comment: Comment: DESeq2 : standardising variation between treatments
7 months ago by bk11 ★ 2.5k
1
vote
0
replies
689
views
Answer: Answer: pheatmap
7 months ago by bk11 ★ 2.5k
0
votes
0
replies
1.1k
views
Comment: Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
7 months ago by bk11 ★ 2.5k
2
votes
1
reply
1.1k
views
Comment: Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
7 months ago by bk11 ★ 2.5k
3
votes
1
reply
512
views
Answer: Answer: Feature plot not applicable for RunTSNE object in seurat?
7 months ago by bk11 ★ 2.5k
404 results • Page 3 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6