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Answer: Answer: Seurat merge and batch correction
updated 8 hours ago by 43k • written 8 hours ago by ★ 2.3k
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86
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Comment: Comment: Find subcluster under a cluster, find differential genes in one cluster between
9 hours ago by bk11 ★ 2.3k
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413
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Comment: Comment: How to convert plink files to Hapmap Format
10 hours ago by bk11 ★ 2.3k
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413
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Comment: Comment: How to convert plink files to Hapmap Format
12 hours ago by bk11 ★ 2.3k
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1
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413
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Comment: Comment: How to convert plink files to Hapmap Format
12 hours ago by bk11 ★ 2.3k
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100
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Comment: Comment: Subset Seurat object from Xenium spatial data
14 hours ago by bk11 ★ 2.3k
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2
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223
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Comment: Comment: Downsampling fastq file
updated 1 day ago by 43k • written 1 day ago by ★ 2.3k
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414
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Comment: Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
5 days ago by bk11 ★ 2.3k
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528
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Comment: Comment: How to get the reference panel for UKBB
6 days ago by bk11 ★ 2.3k
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1
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235
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Answer: Answer: How to filter columns in a raw sparse matrix in R
7 days ago by bk11 ★ 2.3k
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396
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Comment: Comment: Rename multiple fastq.gz files
7 days ago by bk11 ★ 2.3k
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1
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396
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Comment: Comment: Rename multiple fastq.gz files
7 days ago by bk11 ★ 2.3k
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396
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Answer: Answer: Rename multiple fastq.gz files
7 days ago by bk11 ★ 2.3k
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0
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184
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Comment: Comment: How to get the reference panel sites for TOPMed hg37 and 38
8 days ago by bk11 ★ 2.3k
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0
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178
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Answer: Answer: convert h5ad to rds
13 days ago by bk11 ★ 2.3k
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571
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Comment: Comment: 99.9999% of Q30 bases is normal?
13 days ago by bk11 ★ 2.3k
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1
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287
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Comment: Comment: Addmetadata to seurat obj
13 days ago by bk11 ★ 2.3k
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215
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Comment: Comment: convert a seurat object to expressionset
13 days ago by bk11 ★ 2.3k
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1
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556
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Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
22 days ago by bk11 ★ 2.3k
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0
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221
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Comment: Comment: Cell type classification using an integrated reference
22 days ago by bk11 ★ 2.3k
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200
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Answer: Answer: RNA-seq with normalized cpm count
29 days ago by bk11 ★ 2.3k
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1
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449
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
4 weeks ago by bk11 ★ 2.3k
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1
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274
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Answer: Answer: Seurat: CreateSeuratObject error, please help
6 weeks ago by bk11 ★ 2.3k
3
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0
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502
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Answer: Answer: SHAPEIT5 phasing
6 weeks ago by bk11 ★ 2.3k
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1
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374
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Comment: Comment: How to find what is the most significantly modulated gene in GEO2R analysis?
9 weeks ago by bk11 ★ 2.3k
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1
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337
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Answer: Answer: Converting SNP data table into .traw format or qtl (R) format
9 weeks ago by bk11 ★ 2.3k
1
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1
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759
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Comment: Comment: ensembl - selecting SNPs of specific genes
9 weeks ago by bk11 ★ 2.3k
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1
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759
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Comment: Comment: ensembl - selecting SNPs of specific genes
9 weeks ago by bk11 ★ 2.3k
1
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1
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759
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Comment: Comment: ensembl - selecting SNPs of specific genes
9 weeks ago by bk11 ★ 2.3k
3
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1
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759
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Answer: Answer: ensembl - selecting SNPs of specific genes
9 weeks ago by bk11 ★ 2.3k
1
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0
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240
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Answer: Answer: 1000 genome project specific genes selection
9 weeks ago by bk11 ★ 2.3k
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0
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458
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Answer: Answer: reading scRNAseq .h5 file into anndata format from GEO - No clear matrix?
10 weeks ago by bk11 ★ 2.3k
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0
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272
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Comment: Comment: X chromosome inactivation
10 weeks ago by bk11 ★ 2.3k
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0
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266
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Answer: Answer: GWAS on unbalanced case-control UKB dataset using PLINK2
10 weeks ago by bk11 ★ 2.3k
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0
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402
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Comment: Comment: Need suggestions for ROC Curve in R
10 weeks ago by bk11 ★ 2.3k
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0
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247
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Comment: Comment: CellPlex CMO highbackground
10 weeks ago by bk11 ★ 2.3k
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1
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464
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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
10 weeks ago by bk11 ★ 2.3k
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1
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464
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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
10 weeks ago by bk11 ★ 2.3k
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1
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331
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Comment: Comment: How to choose --hwe threshold?
10 weeks ago by bk11 ★ 2.3k
1
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0
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410
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Comment: Comment: Merge seurat list
11 weeks ago by bk11 ★ 2.3k
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0
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364
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Comment: Comment: GO enrichment plot with dotplot strange axis
11 weeks ago by bk11 ★ 2.3k
1
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1
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410
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Answer: Answer: Merge seurat list
11 weeks ago by bk11 ★ 2.3k
0
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1
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364
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Comment: Comment: GO enrichment plot with dotplot strange axis
11 weeks ago by bk11 ★ 2.3k
2
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1
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493
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Answer: Answer: Splitting scRNA seq data from Multiome data(scRNA+ scATAC)
updated 10 weeks ago by 43k • written 11 weeks ago by ★ 2.3k
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1
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1.2k
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Answer: Answer: Issues with Merging Seurat Objects: Multiple Counts in Assays Layer
11 weeks ago by bk11 ★ 2.3k
0
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1
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476
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Comment: Comment: How to find SNP locations in assemblies other than hg38
11 weeks ago by bk11 ★ 2.3k
1
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0
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302
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Answer: Answer: Extract information of mapped reads bam files
11 weeks ago by bk11 ★ 2.3k
2
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1
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1.0k
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Comment: Comment: Shrink logFC values after edgeR
11 weeks ago by bk11 ★ 2.3k
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0
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244
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Comment: Comment: Is it possible to identify the strand of an RNA using UMI?
11 weeks ago by bk11 ★ 2.3k
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1
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514
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Comment: Comment: Does salmon work with combined short and long read bam file?
11 weeks ago by bk11 ★ 2.3k
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