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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
12 weeks ago by bk11 ★ 2.4k
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1
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368
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Comment: Comment: How to choose --hwe threshold?
12 weeks ago by bk11 ★ 2.4k
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440
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Comment: Comment: Merge seurat list
12 weeks ago by bk11 ★ 2.4k
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0
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394
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Comment: Comment: GO enrichment plot with dotplot strange axis
12 weeks ago by bk11 ★ 2.4k
1
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1
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440
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Answer: Answer: Merge seurat list
12 weeks ago by bk11 ★ 2.4k
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1
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394
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Comment: Comment: GO enrichment plot with dotplot strange axis
3 months ago by bk11 ★ 2.4k
2
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1
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521
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Answer: Answer: Splitting scRNA seq data from Multiome data(scRNA+ scATAC)
updated 12 weeks ago by 43k • written 3 months ago by ★ 2.4k
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1
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1.4k
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Answer: Answer: Issues with Merging Seurat Objects: Multiple Counts in Assays Layer
3 months ago by bk11 ★ 2.4k
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1
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495
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Comment: Comment: How to find SNP locations in assemblies other than hg38
3 months ago by bk11 ★ 2.4k
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0
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320
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Answer: Answer: Extract information of mapped reads bam files
3 months ago by bk11 ★ 2.4k
2
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1
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1.1k
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Comment: Comment: Shrink logFC values after edgeR
3 months ago by bk11 ★ 2.4k
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0
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254
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Comment: Comment: Is it possible to identify the strand of an RNA using UMI?
3 months ago by bk11 ★ 2.4k
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1
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547
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Comment: Comment: Does salmon work with combined short and long read bam file?
3 months ago by bk11 ★ 2.4k
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1
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522
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Comment: Comment: allele matching between identical genotypes
3 months ago by bk11 ★ 2.4k
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0
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236
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Comment: Comment: EnhancedVolcanop plot using GSE data
3 months ago by bk11 ★ 2.4k
1
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1
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459
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Comment: Comment: 1000G Reference Panel Hg38 Michigan Imputation Server
3 months ago by bk11 ★ 2.4k
2
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1
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607
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Comment: Comment: PCA plot interpretation (single population)
3 months ago by bk11 ★ 2.4k
0
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0
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272
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Answer: Answer: Obtain rsID GWAS variants (9M)
3 months ago by bk11 ★ 2.4k
2
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0
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290
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Answer: Answer: Data scaling in single-cell RNAseq - sample-wise or on the full set?
3 months ago by bk11 ★ 2.4k
0
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1
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373
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Comment: Comment: GEO Affymetrix data for differential expression analysis?
3 months ago by bk11 ★ 2.4k
1
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0
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449
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Comment: Comment: Transcript Based Annotation of Variants Using Annovar
3 months ago by bk11 ★ 2.4k
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1
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403
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Comment: Comment: Freyja tool help
3 months ago by bk11 ★ 2.4k
1
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0
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313
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Answer: Answer: filter 1000 genome vcf file to keep common snps
3 months ago by bk11 ★ 2.4k
0
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0
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655
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
3 months ago by bk11 ★ 2.4k
1
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0
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242
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Comment: Comment: Extract Domain Architectures from Pfam / Interpro
3 months ago by bk11 ★ 2.4k
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0
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290
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Comment: Comment: Compute ld and genomic distance using clump function in plink
3 months ago by bk11 ★ 2.4k
1
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1
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1.1k
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
4 months ago by bk11 ★ 2.4k
1
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1
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1.1k
views
Answer: Answer: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
4 months ago by bk11 ★ 2.4k
0
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0
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487
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Comment: Comment: sample data for plant RNA seq analysis
4 months ago by bk11 ★ 2.4k
1
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0
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377
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Comment: Comment: RNA-Seq and ATAC-Seq quality check
4 months ago by bk11 ★ 2.4k
0
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0
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730
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Comment: Comment: There are several lines in Manhattan plot.
4 months ago by bk11 ★ 2.4k
2
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0
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328
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Answer: Answer: OSCA -open .h5 file
4 months ago by bk11 ★ 2.4k
0
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0
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523
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Comment: Comment: Help with PRS score
4 months ago by bk11 ★ 2.4k
0
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1
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523
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Comment: Comment: Help with PRS score
4 months ago by bk11 ★ 2.4k
0
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1
reply
523
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Comment: Comment: Help with PRS score
4 months ago by bk11 ★ 2.4k
0
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0
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304
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Comment: Comment: Trimming reads before running Juicer
4 months ago by bk11 ★ 2.4k
1
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0
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333
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Comment: Comment: Metabolomics Data Analysis
4 months ago by bk11 ★ 2.4k
0
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1
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730
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Answer: Answer: There are several lines in Manhattan plot.
4 months ago by bk11 ★ 2.4k
0
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1
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444
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Answer: Answer: tool to find enhancer associated to gene list
4 months ago by bk11 ★ 2.4k
1
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1
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599
views
Answer: Answer: How to compute Hudson's/Bhatia's FST in R OR with vcf?
4 months ago by bk11 ★ 2.4k
0
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1
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439
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Comment: Comment: Seeking Individual-Level Genotype Data for Linkage Disequilibrium Analysis Beyon
4 months ago by bk11 ★ 2.4k
1
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0
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626
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Answer: Answer: Convert bed file from hg19 to GRCH38
4 months ago by bk11 ★ 2.4k
0
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0
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407
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Comment: Comment: select unique samples in R
5 months ago by bk11 ★ 2.4k
0
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13
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1.6k
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Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cell Ranger.
fixed-RNA-profiling chromium cellranger scFFPE
updated 5 months ago by ▴ 70 • written 6 months ago by ★ 2.4k
0
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0
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2.4k
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Comment: Comment: Cellcyclescoring did not work in Seurat V5
5 months ago by bk11 ★ 2.4k
2
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2
replies
586
views
Answer: Answer: Alternatives to snpflip to find ambigious and flipped snps
5 months ago by bk11 ★ 2.4k
1
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1
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456
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Comment: Comment: Quality control on imputed genotypes for GWAS / application of PGS
5 months ago by bk11 ★ 2.4k
2
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0
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1.6k
views
Answer: Answer: keep getting error while trying to convert Seurat object into a H5ad file
5 months ago by bk11 ★ 2.4k
0
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1
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983
views
Comment: Comment: scRNA-seq quality control
5 months ago by bk11 ★ 2.4k
1
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1
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892
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Comment: Comment: duplicates issues when trying to convert long to wide in R
5 months ago by bk11 ★ 2.4k
398 results • Page 2 of 8
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