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Answer: Answer: Single cell visulaisation webtool
5 months ago by antonioggsousa 3.2k
3
votes
1
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831
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Answer: Answer: Can't do runPCA after merging a splited Seurat object before UMAP
5 months ago by antonioggsousa 3.2k
3
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1
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886
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Answer: Answer: Should I scale all genes in single cell Seurat?
5 months ago by antonioggsousa 3.2k
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570
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Answer: Answer: Monocle3 transition to seurat
6 months ago by antonioggsousa 3.2k
1
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0
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416
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Answer: Answer: Using DADA2 for finding viral sequence variants
6 months ago by antonioggsousa 3.2k
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0
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1.1k
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Answer: Answer: Cacoa with Seurat analysis
7 months ago by antonioggsousa 3.2k
8
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3
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1.7k
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Answer: Answer: When should I NOT apply batch correction for my single-cell RNAseq data?
updated 7 months ago by 43k • written 7 months ago by 3.2k
1
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1
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1000
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Answer: Answer: 18S taxonomy assignment SILVA database formatting
7 months ago by antonioggsousa 3.2k
2
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1
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3.2k
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Answer: Answer: DoHeatmap Seurat Edit Legend
15 months ago by antonioggsousa 3.2k
2
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1
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2.2k
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Answer: Answer: How to get parameter for cluster in scCATCH tool
20 months ago by antonioggsousa 3.2k
0
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1
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1.7k
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Answer: Answer: Are there any tools that automatically detect where to truncate forward and reve
21 months ago by antonioggsousa 3.2k
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1
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1.2k
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Answer: Answer: Is it required for all sequences to be same length when clustering OTUs in metag
21 months ago by antonioggsousa 3.2k
3
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1
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958
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Answer: Answer: Does Seurat have Pearson Residual (Poisson) normalization method?
21 months ago by antonioggsousa 3.2k
2
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3
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8.0k
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Answer: Answer: Error in Read10X(data.dir
2.4 years ago by antonioggsousa 3.2k
2
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1
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1.5k
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Answer: Answer: Jaccard distance matric in Phyloseq
2.5 years ago by antonioggsousa 3.2k
3
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1
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2.1k
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Answer: Answer: STAR alignment in a full directory
2.5 years ago by antonioggsousa 3.2k
2
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1
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1.9k
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Answer: Answer: How to create an OTU table out of phyla abundance?
3.0 years ago by antonioggsousa 3.2k
1
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1
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2.4k
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Answer: Answer: Which formula of Bray-Curtis beta diversity index should be used for microbiome
3.1 years ago by antonioggsousa 3.2k
3
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1
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2.0k
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Answer: Answer: How can I get the Shannon and observed alpha diversity Index value?
3.1 years ago by antonioggsousa 3.2k
1
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1
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2.3k
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Answer: A: Extracting group-specific combinations from distance matrix
3.3 years ago by antonioggsousa 3.2k
4
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1
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2.2k
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Answer: C: Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
3.3 years ago by antonioggsousa 3.2k
2
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1
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1.9k
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Answer: C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
3.3 years ago by antonioggsousa 3.2k
4
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2
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1.2k
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Answer: C: separate_rows, but keep related ones together
3.3 years ago by antonioggsousa 3.2k
5
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1
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1.7k
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Answer: A: Trimmomatic MINLEN option doesn't work
3.4 years ago by antonioggsousa 3.2k
0
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1
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3.0k
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Answer: A: Greengenes OTU ID
3.4 years ago by antonioggsousa 3.2k
3
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1
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1.4k
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Answer: C: EnhancedVolcano custom color variables by log2FC and p-value
updated 3.4 years ago by 88k • written 3.4 years ago by 3.2k
5
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1
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2.9k
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Answer: C: Problem when running FeatureCounts
3.4 years ago by antonioggsousa 3.2k
1
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2
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793
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Answer: A: Illumina technology output, 16S amplicon
3.4 years ago by antonioggsousa 3.2k
0
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1
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1.4k
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Answer: A: Translation from fasta file which contains 6 sequences
3.4 years ago by antonioggsousa 3.2k
2
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1
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13k
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Answer: A: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
3.4 years ago by antonioggsousa 3.2k
0
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1
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1.7k
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Answer: A: Do you NEED to bin a metagenome into MAGs?
3.4 years ago by antonioggsousa 3.2k
1
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1
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1.8k
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Answer: A: How to deal with techinical replicates in 16S amplicon sequencing data/OTU table
3.4 years ago by antonioggsousa 3.2k
2
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0
replies
1.3k
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Answer: A: what is environmental sample (Taxonomy ID: 61964) in NCBI?
3.5 years ago by antonioggsousa 3.2k
0
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1
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1.5k
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Answer: A: Preparing 16S gene amplicon (metagenomic) sequencing data for submission to ENA
3.5 years ago by antonioggsousa 3.2k
0
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0
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3.4k
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Answer: A: questions about qiime2 manifest file; error message: semantic type SampleData[Se
3.5 years ago by antonioggsousa 3.2k
2
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1
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2.8k
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Answer: A: SparCC repository gone
3.6 years ago by antonioggsousa 3.2k
1
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0
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644
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Answer: A: Appending output to a vector in R
3.6 years ago by antonioggsousa 3.2k
2
votes
1
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1.1k
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Answer: A: do we clone sequences while performing shotgun sequencing on microbiome?
3.6 years ago by antonioggsousa 3.2k
0
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0
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905
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Answer: C: Does anyone know/would be willing to give me a guide on how to do ChIP-Seq data
3.6 years ago by antonioggsousa 3.2k
8
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0
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4.8k
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Answer: A: [RNA-Seq] STAR vs Subread
3.6 years ago by antonioggsousa 3.2k
0
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0
replies
881
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Answer: A: running HISAT2 with multiple samples
3.6 years ago by antonioggsousa 3.2k
0
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0
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694
views
Answer: A: Add Both Legends to a Plot
3.7 years ago by antonioggsousa 3.2k
3
votes
1
reply
2.4k
views
Answer: A: change the color of the plot
3.7 years ago by antonioggsousa 3.2k
4
votes
1
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12k
views
Answer: A: saving ggplotly as html
3.7 years ago by antonioggsousa 3.2k
12
votes
1
reply
24k
views
Answer: A: Adding p value to Vlnplot in Seurat
3.7 years ago by antonioggsousa 3.2k
0
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1
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1.8k
views
Answer: A: How to fix extreme outliers not picked up by DESeq2?
3.7 years ago by antonioggsousa 3.2k
4
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1
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2.0k
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Answer: A: Identity of the RidgePlot in single cell
3.7 years ago by antonioggsousa 3.2k
2
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0
replies
2.2k
views
Answer: A: Workflow/pipeline for detecting isoforms/alternative splicing
3.7 years ago by antonioggsousa 3.2k
4
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1
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6.1k
views
Answer: A: Top Variable DEGs into a heatmap
3.7 years ago by antonioggsousa 3.2k
1
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1
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1.6k
views
Answer: A: Installation of libraries as non-root user in server without internet connection
3.7 years ago by antonioggsousa 3.2k
101 results • Page 1 of 3
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