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yhoogstrate
yhoogstrate
Reputation:
150
Joined:
9.9 years ago
Last seen:
3.0 years ago
Location:
Netherlands
Latest posts by user
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Comment: Comment: Problem in loading multiple BAM files in IGV
written by yhoogstrate yhoogstrate
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Answer: Answer: Extract paired-end reads with one end falls within a given region from a bam fil
written by yhoogstrate yhoogstrate
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Comment: Comment: High percentage of intronic/intergenic reads in RNA-seq
written by yhoogstrate yhoogstrate
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Answer: Answer: High percentage of intronic/intergenic reads in RNA-seq
written by yhoogstrate yhoogstrate
1 vote
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Answer: Answer: polyA+ versus polyA- RNA seq from ENCODE
written by yhoogstrate yhoogstrate
3 votes
2 replies
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Answer: Answer: RNAseq: Filtering before or after transformation?
written by yhoogstrate yhoogstrate
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Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
written by yhoogstrate yhoogstrate
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Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
written by yhoogstrate yhoogstrate
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Answer: Answer: HT-seq, No feature, Alignment not unique Output
written by yhoogstrate yhoogstrate
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Answer: Answer: How to run MD5 check for many fastq files in subdirectories?
written by yhoogstrate yhoogstrate
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Answer: Answer: samtools coverage
written by yhoogstrate yhoogstrate
2 votes
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Answer: Answer: Tools to compute Lorenz curve of coverage uniformity
written by yhoogstrate yhoogstrate
1 vote
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Answer: Answer: HTSeq - Extracting exon level read coverage of a specific gene
written by yhoogstrate yhoogstrate
1 vote
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Answer: A: Estimation of RNA-seq protocol from bam files
written by yhoogstrate yhoogstrate
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Comment: C: Convert 2 SE bam to PE bam (alignment BWA mem)
written by yhoogstrate yhoogstrate
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Comment: C: Subsampling one bamfile multiple times?
written by yhoogstrate yhoogstrate
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Answer: A: Merging two fastq.gz files
written by yhoogstrate yhoogstrate
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Answer: A: HOw to merge multifasta sequence into a single sequence having only one header?
written by yhoogstrate yhoogstrate
1 vote
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Answer: A: How to count fasta sequences efficiently using (or not ) biopython
written by yhoogstrate yhoogstrate
1 vote
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Comment: C: Regarding Sam output
written by yhoogstrate yhoogstrate
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