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Answer: Answer: How to compute TPM normalized values for TCGA miRNA data?
5 days ago by dsull ★ 6.0k
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251
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Answer: Answer: RNA-seq data for deep learning classification
9 days ago by dsull ★ 6.0k
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1
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448
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Answer: Answer: How should I make kallisto indexes?
12 days ago by dsull ★ 6.0k
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835
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Answer: Answer: High Malat-1 expression in single cell data
12 days ago by dsull ★ 6.0k
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471
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Answer: Answer: What does it mean single base resolution in sequencing?
13 days ago by dsull ★ 6.0k
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1
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780
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Answer: Answer: Heatmap and rna-seq
15 days ago by dsull ★ 6.0k
2
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1
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365
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
15 days ago by dsull ★ 6.0k
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2
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578
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Answer: Answer: To get p-values for the TPM
17 days ago by dsull ★ 6.0k
2
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1
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581
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
19 days ago by dsull ★ 6.0k
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378
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Answer: Answer: How to establish haplotype-specific gene expression levels
15 days ago by dsull ★ 6.0k
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570
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
4 weeks ago by dsull ★ 6.0k
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1
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415
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Answer: Answer: DESeq2 and normalization
6 weeks ago by dsull ★ 6.0k
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1
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750
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
7 weeks ago by dsull ★ 6.0k
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1
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251
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Answer: Answer: DEG (Differential expression gene) analysis
7 weeks ago by dsull ★ 6.0k
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0
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410
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Answer: Answer: scRNAseq normalization
7 weeks ago by dsull ★ 6.0k
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0
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165
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Answer: Answer: STAR --sjdbGTFfile in alignment step
8 weeks ago by dsull ★ 6.0k
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1
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315
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
9 weeks ago by dsull ★ 6.0k
4
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1
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382
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
10 weeks ago by dsull ★ 6.0k
3
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592
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
11 weeks ago by dsull ★ 6.0k
0
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0
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621
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Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 6.0k
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0
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261
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Answer: Answer: Using tophat2 output for kallisto
11 weeks ago by dsull ★ 6.0k
2
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1
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399
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Answer: Answer: bulk seq vs. sc-seq
3 months ago by dsull ★ 6.0k
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1
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591
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Answer: Answer: Differential expression analysis with very high duplication rate
3 months ago by dsull ★ 6.0k
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0
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406
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Answer: Answer: How to do DESeq2 on Kallisto Data
3 months ago by dsull ★ 6.0k
3
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1
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648
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Answer: Answer: RNA seq, correlation, gene expression, STAR count
3 months ago by dsull ★ 6.0k
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1
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1.1k
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Answer: Answer: I would like to exclude rRNA in RSEM and quantify it.
3 months ago by dsull ★ 6.0k
3
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1
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333
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Answer: Answer: Using Expression of a Gene as a Linear Regression Variable
4 months ago by dsull ★ 6.0k
2
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1
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387
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Answer: Answer: STAR index generation killed after "inserting junctions into the genome indices"
updated 4 months ago by 82k • written 4 months ago by ★ 6.0k
1
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1
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581
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Answer: Answer: Kallisto-Bustools Output prpblems
4 months ago by dsull ★ 6.0k
2
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1
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589
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Answer: Answer: Kallisto-bustools output to Seurat Object
4 months ago by dsull ★ 6.0k
0
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1
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793
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Answer: Answer: bwa-mem reproducibility
4 months ago by dsull ★ 6.0k
3
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1
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1.2k
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Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
5 months ago by dsull ★ 6.0k
1
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1
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613
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Answer: Answer: Should SMART-seq2 data be deduplicated in STAR?
5 months ago by dsull ★ 6.0k
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1
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637
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Answer: Answer: Three questions about datasets
5 months ago by dsull ★ 6.0k
2
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1
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658
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Answer: Answer: Smart seq3 analysis
5 months ago by dsull ★ 6.0k
2
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0
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591
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Answer: Answer: salmon for gene expression quantification
5 months ago by dsull ★ 6.0k
1
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1
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717
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Answer: Answer: Quality filtering prior to pseudoalignment
5 months ago by dsull ★ 6.0k
3
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1
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693
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Answer: Answer: Why am I getting different results with kallisto?
6 months ago by dsull ★ 6.0k
1
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0
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325
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Answer: Answer: Intenger encoding versus one-hot encoding for chromosome as a predictor in a neu
6 months ago by dsull ★ 6.0k
1
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1
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1.0k
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Answer: Answer: Best command line tool for downloading sequencing reads
6 months ago by dsull ★ 6.0k
0
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1
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494
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Answer: Answer: GSEA analysis for phosphoproteins
7 months ago by dsull ★ 6.0k
1
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1
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711
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Answer: Answer: How to assign gene names after kallisto when I add GFP?
7 months ago by dsull ★ 6.0k
1
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0
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1.8k
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Answer: Answer: Unmapped Reads in Kallisto
7 months ago by dsull ★ 6.0k
0
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1
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1.2k
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Answer: Answer: Can one sample t.test be used to determine statistical significance for log2FC v
8 months ago by dsull ★ 6.0k
0
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0
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1.5k
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Answer: Answer: Is Bioinformatics a Professional Degree?
8 months ago by dsull ★ 6.0k
2
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1
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484
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Answer: Answer: Is it possible to detect fusion genes by either stranded or unstranded RNA-seq?
8 months ago by dsull ★ 6.0k
0
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1
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546
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Answer: Answer: Extracting RNA sequence - single cell
9 months ago by dsull ★ 6.0k
1
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1
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935
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Answer: Answer: Problem creating salmon index
9 months ago by dsull ★ 6.0k
1
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2
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746
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Answer: Answer: Where can I find the --chromosomes file for kallisto?
10 months ago by dsull ★ 6.0k
1
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1
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713
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Answer: Answer: MAGeCK MLE's sgRNA efficacies always end up at 1.0
10 months ago by dsull ★ 6.0k
193 results • Page 1 of 4
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