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Comment: Comment: NGS forensics: how to know if data is fabricated
1 hour ago by dsull ★ 5.9k
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315
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Comment: Comment: NGS forensics: how to know if data is fabricated
2 hours ago by dsull ★ 5.9k
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0
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557
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Comment: Comment: Heatmap and rna-seq
18 hours ago by dsull ★ 5.9k
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1
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557
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Answer: Answer: Heatmap and rna-seq
1 day ago by dsull ★ 5.9k
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1
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232
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
1 day ago by dsull ★ 5.9k
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0
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444
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Comment: Comment: To get p-values for the TPM
2 days ago by dsull ★ 5.9k
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1
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444
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Comment: Comment: To get p-values for the TPM
3 days ago by dsull ★ 5.9k
1
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2
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444
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Answer: Answer: To get p-values for the TPM
3 days ago by dsull ★ 5.9k
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1
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449
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Comment: Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
3 days ago by dsull ★ 5.9k
2
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1
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449
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
5 days ago by dsull ★ 5.9k
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0
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328
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Answer: Answer: How to establish haplotype-specific gene expression levels
1 day ago by dsull ★ 5.9k
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0
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204
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Comment: Comment: from row count to tpm
5 days ago by dsull ★ 5.9k
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0
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181
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Comment: Comment: Help/Direction Needed for Data Analysis of RNA
11 days ago by dsull ★ 5.9k
1
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1
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515
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Comment: Comment: STARsolo ; Reads are NOT mapped to transcriptome
17 days ago by dsull ★ 5.9k
1
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1
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515
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
17 days ago by dsull ★ 5.9k
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1
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328
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Comment: Comment: How to to establish haplotype-specific gene expression levels
17 days ago by dsull ★ 5.9k
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0
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267
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Comment: Comment: rRNA depletion of RIP-seq samples
18 days ago by dsull ★ 5.9k
1
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1
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207
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Comment: Comment: In need of help with my RNA velocity trajectory inference pipeline!
19 days ago by dsull ★ 5.9k
1
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0
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264
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Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
24 days ago by dsull ★ 5.9k
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0
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475
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Comment: Comment: Installing Cell Ranger
26 days ago by dsull ★ 5.9k
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0
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386
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Comment: Comment: DESeq2 and normalization
29 days ago by dsull ★ 5.9k
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0
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554
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Comment: Comment: STAR aligner options
4 weeks ago by dsull ★ 5.9k
1
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0
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846
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Comment: Comment: Only one read per run - Trying to use CellRangerv7
4 weeks ago by dsull ★ 5.9k
0
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1
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554
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Comment: Comment: STAR aligner options
4 weeks ago by dsull ★ 5.9k
1
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1
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386
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Answer: Answer: DESeq2 and normalization
4 weeks ago by dsull ★ 5.9k
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0
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7.0k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
4 weeks ago by dsull ★ 5.9k
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1
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7.0k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
4 weeks ago by dsull ★ 5.9k
1
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1
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708
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Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
5 weeks ago by dsull ★ 5.9k
1
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1
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708
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
5 weeks ago by dsull ★ 5.9k
0
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0
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233
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Comment: Comment: DEG (Differential expression gene) analysis
5 weeks ago by dsull ★ 5.9k
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1
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233
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Answer: Answer: DEG (Differential expression gene) analysis
5 weeks ago by dsull ★ 5.9k
3
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1
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365
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Comment: Comment: Average expression of a sample in single-cell data
5 weeks ago by dsull ★ 5.9k
1
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0
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386
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Answer: Answer: scRNAseq normalization
5 weeks ago by dsull ★ 5.9k
0
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0
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158
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Answer: Answer: STAR --sjdbGTFfile in alignment step
6 weeks ago by dsull ★ 5.9k
1
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0
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312
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Comment: Comment: RNA-seq bam file normalization
7 weeks ago by dsull ★ 5.9k
1
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1
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288
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
7 weeks ago by dsull ★ 5.9k
2
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0
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359
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Comment: Comment: How I should set `STAR` parameters to keep all the intronic reads?
8 weeks ago by dsull ★ 5.9k
4
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1
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359
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
8 weeks ago by dsull ★ 5.9k
1
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1
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616
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Comment: Comment: Huge decrease of BUS records using bustools
8 weeks ago by dsull ★ 5.9k
0
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1
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267
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Comment: Comment: Why does Phred+ encoding changes after trimming fastq files??
8 weeks ago by dsull ★ 5.9k
3
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0
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555
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
9 weeks ago by dsull ★ 5.9k
0
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0
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579
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Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 5.9k
0
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0
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579
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Comment: Comment: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
9 weeks ago by dsull ★ 5.9k
2
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0
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491
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Comment: Comment: How does kallisto handle multi mapped reads?
9 weeks ago by dsull ★ 5.9k
0
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0
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251
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Answer: Answer: Using tophat2 output for kallisto
9 weeks ago by dsull ★ 5.9k
0
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2
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491
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Comment: Comment: How does kallisto handle multi mapped reads?
9 weeks ago by dsull ★ 5.9k
2
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1
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375
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Answer: Answer: bulk seq vs. sc-seq
11 weeks ago by dsull ★ 5.9k
0
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1
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558
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Comment: Comment: Differential expression analysis with very high duplication rate
11 weeks ago by dsull ★ 5.9k
0
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1
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558
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Answer: Answer: Differential expression analysis with very high duplication rate
11 weeks ago by dsull ★ 5.9k
1
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0
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377
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Answer: Answer: How to do DESeq2 on Kallisto Data
11 weeks ago by dsull ★ 5.9k
605 results • Page 1 of 13
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