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Comment:
Comment: High Malat-1 expression in single cell data
4 days ago by
dsull
★ 6.0k
0
votes
1
reply
243
views
Answer:
Answer: How to compute TPM normalized values for TCGA miRNA data?
5 days ago by
dsull
★ 6.0k
1
vote
1
reply
837
views
Comment:
Comment: High Malat-1 expression in single cell data
8 days ago by
dsull
★ 6.0k
0
votes
0
replies
320
views
Comment:
Comment: How does gene length effect the number of reads mapped
8 days ago by
dsull
★ 6.0k
2
votes
0
replies
837
views
Comment:
Comment: High Malat-1 expression in single cell data
8 days ago by
dsull
★ 6.0k
0
votes
1
reply
320
views
Comment:
Comment: How does gene length effect the number of reads mapped
9 days ago by
dsull
★ 6.0k
1
vote
1
reply
252
views
Answer:
Answer: RNA-seq data for deep learning classification
9 days ago by
dsull
★ 6.0k
0
votes
0
replies
384
views
Comment:
Comment: What purposes can TPM values be used for?
9 days ago by
dsull
★ 6.0k
0
votes
0
replies
449
views
Comment:
Comment: How should I make kallisto indexes?
12 days ago by
dsull
★ 6.0k
0
votes
0
replies
449
views
Comment:
Comment: How should I make kallisto indexes?
12 days ago by
dsull
★ 6.0k
0
votes
1
reply
449
views
Answer:
Answer: How should I make kallisto indexes?
12 days ago by
dsull
★ 6.0k
1
vote
0
replies
837
views
Comment:
Comment: High Malat-1 expression in single cell data
12 days ago by
dsull
★ 6.0k
0
votes
0
replies
473
views
Comment:
Comment: What does it mean single base resolution in sequencing?
12 days ago by
dsull
★ 6.0k
1
vote
1
reply
837
views
Answer:
Answer: High Malat-1 expression in single cell data
12 days ago by
dsull
★ 6.0k
0
votes
1
reply
473
views
Comment:
Comment: What does it mean single base resolution in sequencing?
13 days ago by
dsull
★ 6.0k
0
votes
0
replies
473
views
Answer:
Answer: What does it mean single base resolution in sequencing?
13 days ago by
dsull
★ 6.0k
1
vote
1
reply
2.1k
views
Comment:
Comment: NGS forensics: how to know if data is fabricated
14 days ago by
dsull
★ 6.0k
2
votes
1
reply
2.1k
views
Comment:
Comment: NGS forensics: how to know if data is fabricated
14 days ago by
dsull
★ 6.0k
0
votes
0
replies
781
views
Comment:
Comment: Heatmap and rna-seq
15 days ago by
dsull
★ 6.0k
1
vote
1
reply
781
views
Answer:
Answer: Heatmap and rna-seq
15 days ago by
dsull
★ 6.0k
2
votes
1
reply
365
views
Answer:
Answer: what is the purpose of indexing the reference genome (Kallisto)
16 days ago by
dsull
★ 6.0k
0
votes
0
replies
578
views
Comment:
Comment: To get p-values for the TPM
17 days ago by
dsull
★ 6.0k
1
vote
1
reply
578
views
Comment:
Comment: To get p-values for the TPM
18 days ago by
dsull
★ 6.0k
1
vote
2
replies
578
views
Answer:
Answer: To get p-values for the TPM
18 days ago by
dsull
★ 6.0k
0
votes
1
reply
583
views
Comment:
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
18 days ago by
dsull
★ 6.0k
2
votes
1
reply
583
views
Answer:
Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
19 days ago by
dsull
★ 6.0k
0
votes
0
replies
379
views
Answer:
Answer: How to establish haplotype-specific gene expression levels
16 days ago by
dsull
★ 6.0k
1
vote
0
replies
308
views
Comment:
Comment: from row count to tpm
19 days ago by
dsull
★ 6.0k
1
vote
0
replies
202
views
Comment:
Comment: Help/Direction Needed for Data Analysis of RNA
25 days ago by
dsull
★ 6.0k
1
vote
1
reply
570
views
Comment:
Comment: STARsolo ; Reads are NOT mapped to transcriptome
4 weeks ago by
dsull
★ 6.0k
1
vote
1
reply
570
views
Answer:
Answer: STARsolo ; Reads are NOT mapped to transcriptome
4 weeks ago by
dsull
★ 6.0k
0
votes
1
reply
379
views
Comment:
Comment: How to to establish haplotype-specific gene expression levels
4 weeks ago by
dsull
★ 6.0k
0
votes
0
replies
293
views
Comment:
Comment: rRNA depletion of RIP-seq samples
4 weeks ago by
dsull
★ 6.0k
1
vote
1
reply
224
views
Comment:
Comment: In need of help with my RNA velocity trajectory inference pipeline!
4 weeks ago by
dsull
★ 6.0k
1
vote
0
replies
284
views
Comment:
Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
5 weeks ago by
dsull
★ 6.0k
0
votes
0
replies
561
views
Comment:
Comment: Installing Cell Ranger
5 weeks ago by
dsull
★ 6.0k
0
votes
0
replies
415
views
Comment:
Comment: DESeq2 and normalization
6 weeks ago by
dsull
★ 6.0k
0
votes
0
replies
589
views
Comment:
Comment: STAR aligner options
6 weeks ago by
dsull
★ 6.0k
1
vote
0
replies
900
views
Comment:
Comment: Only one read per run - Trying to use CellRangerv7
6 weeks ago by
dsull
★ 6.0k
0
votes
1
reply
589
views
Comment:
Comment: STAR aligner options
6 weeks ago by
dsull
★ 6.0k
1
vote
1
reply
415
views
Answer:
Answer: DESeq2 and normalization
6 weeks ago by
dsull
★ 6.0k
0
votes
0
replies
7.2k
views
Comment:
Comment: Differences between SMART-seq2, SMART-seq3, and 10x
6 weeks ago by
dsull
★ 6.0k
0
votes
1
reply
7.2k
views
Comment:
Comment: Differences between SMART-seq2, SMART-seq3, and 10x
6 weeks ago by
dsull
★ 6.0k
1
vote
1
reply
751
views
Comment:
Comment: cutadapt not trimming all adapters in PE Illumina sequencing
7 weeks ago by
dsull
★ 6.0k
1
vote
1
reply
751
views
Answer:
Answer: cutadapt not trimming all adapters in PE Illumina sequencing
7 weeks ago by
dsull
★ 6.0k
0
votes
0
replies
251
views
Comment:
Comment: DEG (Differential expression gene) analysis
7 weeks ago by
dsull
★ 6.0k
0
votes
1
reply
251
views
Answer:
Answer: DEG (Differential expression gene) analysis
7 weeks ago by
dsull
★ 6.0k
3
votes
1
reply
380
views
Comment:
Comment: Average expression of a sample in single-cell data
7 weeks ago by
dsull
★ 6.0k
1
vote
0
replies
411
views
Answer:
Answer: scRNAseq normalization
7 weeks ago by
dsull
★ 6.0k
0
votes
0
replies
165
views
Answer:
Answer: STAR --sjdbGTFfile in alignment step
8 weeks ago by
dsull
★ 6.0k
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